Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001810 (amyA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001810 showshow history
Names
amyA ECDH10B_2068
Product
cytoplasmic alpha-amylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2095188 2096675 1488 496
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Jul 2009
Automated Process Approved IPR006589 (IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain) Jul 2009
Automated Process Approved IPR006047 (IPR006047 Glycosyl hydrolase, family 13, catalytic domain) Jul 2009
Automated Process Approved IPR006048 (IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta) Jul 2009
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2009
Automated Process Approved IPR013776 (IPR013776 Alpha-amylase, thermostable) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005509 calcium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013776
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013776
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name amyA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006414
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2068 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cytoplasmic alpha-amylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006047 Glycosyl hydrolase, family 13, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006047
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013776 Alpha-amylase, thermostable Protein Sequence Similarity - InterPro Domain: IPR013776
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta Protein Sequence Similarity - InterPro Domain: IPR006048
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006414 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006414
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013776
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005509 calcium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013776
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002589 amyA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002685 amyA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001477 amyA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008920 amyA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001876 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009497 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001811 amyA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007373 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009761 amyA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008683 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078465 amyA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009847 amyA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010377 amyA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002175 amyA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006599 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000408 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006099 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010388 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009844 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009965 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007542 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009910 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010565 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010133 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010900 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009994 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009977 amyA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010575 amyA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026752 amyA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008485 amyA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006704 amyA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006414 amyA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001976 amyA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002193 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001253 amyA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132656 amyA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003892 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002135 amyA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005335 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002311 amyA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005553 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003487 amyA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003412 amyA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004460 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006540 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008389 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008339 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008382 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005659 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006489 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004283 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000909 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000907 amyA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001196 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006728 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007935 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006203 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008367 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109338 amyA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082628 amyA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096340 amyA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007338 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009135 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007691 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001183 amyA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006453 amyA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001232 amyA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073175 amyA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088256 amyA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002113 amyA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002178 amyA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001846 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005752 amyA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000277 amyA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000379 amyA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003458 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2090188 to 2101675
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001806fliACDScomplement20901022090821Upstream
AEC-0001807fliDCDSforward20929042094310Upstream
AEC-0001808fliSCDSforward20943352094745Upstream
AEC-0001809fliTCDSforward20947452095110Upstream
AEC-0001810amyACDSforward20951882096675Matches
AEC-0001811yedDCDScomplement20967092097122Downstream
AEC-0001812yedECDSforward20973092098514Downstream
AEC-0001813yedFCDSforward20985112098744Downstream
AEC-0001814yedKCDSforward20988532099521Downstream
AEC-0001815yedLCDSforward20996322100111Downstream
AEC-0001816yedN_2CDScomplement21003802100571Downstream
AEC-0001817yedN_1CDScomplement21005812100901Downstream
AEC-0001818yedMCDScomplement21010332101383Downstream
AEC-0001819intGpseudogeneforward21015342101812Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948