Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001860 (shiA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001860 showshow history
Names
shiA ECDH10B_2125
Product
shikimate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2142675 2143991 1317 439
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004736 (IPR004736 MFS transporter, metabolite:H symporter) Jul 2009
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name shiA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006572
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2125 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product shikimate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004736 MFS transporter, metabolite:H symporter Protein Sequence Similarity - InterPro Domain: IPR004736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006572 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006572
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002704 shiA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002447 shiA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018396 lfcT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003574 shiA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009525 shiA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001970 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009439 shiA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001918 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007314 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010247 shiA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009961 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078569 shiA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009615 shiA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010734 shiA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002222 shiA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006700 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005352 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006222 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010505 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010585 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010693 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007663 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010565 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010886 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009723 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010534 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010361 shiA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009669 shiA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026865 shiA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009340 yhjE_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006779 shiA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006572 shiA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002033 shiA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002304 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001143 shiA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132775 shiA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004692 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002201 shiA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060435 shiA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000145 shiA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000074 shiA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001364 shiA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006383 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002596 shiA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2137675 to 2148991
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001857yeeJCDSforward21339702141046Upstream
AEC-0001858yeeL_2CDScomplement21413082141634Upstream
AEC-0001859yeeL_1CDScomplement21416562142360Upstream
AEC-0001860shiACDSforward21426752143991Matches
AEC-0001861amnCDSforward21440932145547Downstream
AEC-0001862yeeNCDSforward21458902146606Downstream
AEC-0004142asnWtRNAcomplement21470592147134Downstream
AEC-0001863yeeOCDScomplement21472352148689Downstream
AEC-0004143asnUtRNAforward21488832148958Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948