Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001861 (amn) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001861 showshow history
Names
amn ECDH10B_2126
Product
AMP nucleosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2144093 2145547 1455 485
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011271 (IPR011271 AMP nucleosidase) Jul 2009
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name amn Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006579
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2126 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product AMP nucleosidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011271 AMP nucleosidase Protein Sequence Similarity - InterPro Domain: IPR011271
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006579 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006579
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001875 amn CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001737 amn CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015894 amn CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001426 amn CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003573 amn CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009526 amn CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001971 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009438 amn CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001919 amn CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007313 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010246 amn CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009962 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078570 amn CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009611 amn CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010735 amn CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002223 amn CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006701 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005353 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010506 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010586 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007664 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010442 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010885 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009724 amn CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010535 amn CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010360 amn CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009670 amn CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026866 amn CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009339 amn CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006780 amn CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006579 amn CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002034 amn CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002305 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001142 amn CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132776 amn CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004691 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002202 amn CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061800 amn CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000892 amn CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001615 amn CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001822 amn CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006285 amn CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000918 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002374 amn CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006611 amn CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006411 amn CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006092 amn CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004409 amn CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006593 amn CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008835 amn CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008714 amn CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005714 amn CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006542 amn CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009316 amn CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000867 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000864 amn CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001105 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006782 amn CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007882 amn CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006250 amn CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109437 amn CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082581 amn CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096461 amn CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007278 amn CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009395 amn CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009279 amn CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006382 amn CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002595 amn CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073271 amn CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088338 amn CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002203 amn CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002250 amn CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003527 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006037 amn CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002961 amn CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000647 amn CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000445 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239263 amn CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001976 amn CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004777 amn CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001170 amn CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122879 amn CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007081 amn CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007515 amn CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001017 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007978 amn CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005948 amn CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031826 amn CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008167 amn CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002105 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001020 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007086 amn CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005817 amn CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002295 amn CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002721 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002311 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2139093 to 2150547
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001857yeeJCDSforward21339702141046Upstream
AEC-0001858yeeL_2CDScomplement21413082141634Upstream
AEC-0001859yeeL_1CDScomplement21416562142360Upstream
AEC-0001860shiACDSforward21426752143991Upstream
AEC-0001861amnCDSforward21440932145547Matches
AEC-0001862yeeNCDSforward21458902146606Downstream
AEC-0004142asnWtRNAcomplement21470592147134Downstream
AEC-0001863yeeOCDScomplement21472352148689Downstream
AEC-0004143asnUtRNAforward21488832148958Downstream
AEC-0001864cblCDScomplement21489962149946Downstream
AEC-0001865nacCDScomplement21500482150965Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948