Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001868 (cobS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001868 showshow history
Names
cobS ECDH10B_2136
Product
cobalamin 5'-phosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2153511 2154254 744 248
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003805 (IPR003805 Adenosylcobinamide-GDP ribazoletransferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008818 cobalamin 5'-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cobS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006613
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2136 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cobalamin 5'-phosphate synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003805 Adenosylcobinamide-GDP ribazoletransferase Protein Sequence Similarity - InterPro Domain: IPR003805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006613 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006613
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008818 cobalamin 5'-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002687 cobS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002810 cobS CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003566 cobS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004941 cobS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002008 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009427 cobS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001927 cobS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007282 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008430 cobS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008045 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078609 cobS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010422 cobS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006319 cobS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002263 cobS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006711 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006000 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006237 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010519 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010599 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009655 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007677 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009703 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010429 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010320 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009735 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009617 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009691 cobS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010440 cobS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026877 cobS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004777 cobS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006790 cobS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006613 cobS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002044 cobS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002316 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001131 cobS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132787 cobS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004682 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002237 cobS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006308 cobS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000907 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002386 cobS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006619 cobS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006429 cobS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006109 cobS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004402 cobS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006601 cobS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005901 cobS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006346 cobS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0003982 cobS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005728 cobS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006556 cobS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007717 cobS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000855 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000854 cobS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001097 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006790 cobS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008266 cobS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006266 cobS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007950 cobS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109453 cobS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082570 cobS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096479 cobS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007269 cobS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004780 cobS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005289 cobS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001334 cobS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006362 cobS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003777 cobS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002582 cobS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073281 cobS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088347 cobS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002214 cobS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002257 cobS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000509 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007789 cobS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000447 cobS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002884 cobS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001261 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2148511 to 2159254
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001863yeeOCDScomplement21472352148689Downstream
AEC-0004143asnUtRNAforward21488832148958Downstream
AEC-0001864cblCDScomplement21489962149946Downstream
AEC-0001865nacCDScomplement21500482150965Downstream
AEC-0004144asnVtRNAforward21512922151367Downstream
AEC-0001866erfKCDScomplement21514232152355Downstream
AEC-0001867cobTCDScomplement21524202153499Downstream
AEC-0001868cobSCDScomplement21535112154254Matches
AEC-0001869cobUCDScomplement21542512154796Overlaps Upstream
AEC-0000033IS5.8repeat_regioncomplement21551912156385Upstream
AEC-0004558CP4-44prophageforward21551912168063Upstream
AEC-0001870insH-6CDScomplement21553372156353Upstream
AEC-0001871yoeA_1CDSpforward21576672158059Upstream
AEC-0004525yoeApseudogeneforward21576672157972(Interval #1) Upstream
AEC-0000034IS2.6repeat_regioncomplement21579732159303Upstream
AEC-0001872insD-3CDScomplement21579842158889Upstream
AEC-0001873insC-3CDScomplement21588472159257Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948