Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001886 (dacD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001886 showshow history
Names
dacD ECDH10B_2157
Product
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2170413 2171579 1167 389
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Automated Process Approved IPR015956 (IPR015956 Penicillin-binding protein, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR001967 (IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal) Jul 2009
Automated Process Approved IPR012907 (IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dacD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006680
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2157 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001967
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015956 Penicillin-binding protein, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006680 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006680
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002886 dacD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002735 dacD CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001416 dacD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003534 dacD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004964 dacD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002072 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009379 dacD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001961 dacD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007275 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008421 dacD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008039 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078671 dacD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010262 dacD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006368 dacD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002291 dacD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006738 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006029 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006265 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010546 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010527 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009682 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007706 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009676 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010402 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010349 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009764 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009646 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009665 dacD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010471 dacD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026895 dacD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004831 dacD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006820 dacD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006680 dacD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002064 dacD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002323 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001050 dacD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132816 dacD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001997 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006354 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000860 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002432 dacD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006665 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006562 dacD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006235 dacD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004356 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006647 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005947 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006392 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004029 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005775 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006602 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007670 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001049 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006836 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006288 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006312 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007996 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096610 dacD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007223 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004734 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005335 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002572 dacD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002284 dacD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2165413 to 2176579
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004558CP4-44prophageforward21551912168063Downstream
AEC-0001878yeeSCDSforward21653402165786Downstream
AEC-0001879yeeTCDSforward21658492166070Downstream
AEC-0001880yeeUCDSforward21661442166512Downstream
AEC-0001881yeeVCDSforward21666012166975Downstream
AEC-0001882yeeWCDSforward21669722167166Downstream
AEC-0004079yoeFCDSforward21676072167963Downstream
AEC-0001883yeeXCDScomplement21680642168459Downstream
AEC-0001884yeeACDScomplement21685652169623Downstream
AEC-0001885sbmCCDScomplement21698212170294Downstream
AEC-0001886dacDCDScomplement21704132171579Matches
AEC-0001887sbcBCDSforward21717882173215Upstream
AEC-0001888yeeDCDScomplement21732582173485Upstream
AEC-0001889yeeECDScomplement21734992174557Upstream
AEC-0001890yeeFCDScomplement21747362176094Upstream
AEC-0001891yeeYCDScomplement21763612177290Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948