Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001897 (hisC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001897 showshow history
Names
hisC ECDH10B_2169
Product
histidinol-phosphate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2181430 2182500 1071 357
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR005861 (IPR005861 Histidinol-phosphate aminotransferase family) Jul 2009
Automated Process Approved IPR001917 (IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005861
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004400 histidinol-phosphate transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005861
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hisC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006717
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2169 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product histidinol-phosphate aminotransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005861 Histidinol-phosphate aminotransferase family Protein Sequence Similarity - InterPro Domain: IPR005861
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Protein Sequence Similarity - InterPro Domain: IPR001917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006717 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006717
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005861
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004400 histidinol-phosphate transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005861
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000250 hisC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000453 hisC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019057 hisC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001407 hisC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003526 hisC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004977 hisC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002082 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009367 hisC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001971 hisC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007265 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008408 hisC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008025 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078682 hisC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010361 hisC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006380 hisC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002301 hisC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006749 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004376 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006354 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010624 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008833 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009758 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007794 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008144 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005640 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009454 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009184 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009657 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006840 hisC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008982 hisC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026907 hisC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004842 hisC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006832 hisC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006717 hisC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002076 hisC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002335 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001038 hisC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132826 hisC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001988 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002301 hisC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062848 hisC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001481 hisC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003946 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001983 hisC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006367 hisC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000843 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002446 hisC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006678 hisC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006603 hisC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006276 hisC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004343 hisC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006661 hisC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005961 hisC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006407 hisC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004043 hisC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005790 hisC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006615 hisC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007657 hisC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000798 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000798 hisC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000967 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006850 hisC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006301 hisC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006380 hisC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005603 hisC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109606 hisC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082513 hisC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096644 hisC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007209 hisC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004721 hisC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005349 hisC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000924 hisC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006612 hisC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003757 hisC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002557 hisC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073318 hisC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088369 hisC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002235 hisC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002296 hisC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000449 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007950 hisC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000519 hisC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001366 hisC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001322 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237681 hisC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007291 hisC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001026 hisC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005676 hisC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001832 hisC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120423 hisC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005682 hisC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004362 hisC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001227 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008972 hisC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004900 hisC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032354 hisC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007754 hisC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002924 hisC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001710 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006568 hisC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006413 hisC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001632 hisC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001981 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002996 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2176430 to 2187500
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001891yeeYCDScomplement21763612177290Upstream
AEC-0001892yeeZCDScomplement21773362178160Upstream
AEC-0004080yoeBCDScomplement21782432178497Upstream
AEC-0001893yefMCDScomplement21784942178745Upstream
AEC-0001894hisLCDSforward21790282179078Upstream
AEC-0001895hisGCDSforward21792242180123Upstream
AEC-0001896hisDCDSforward21801292181433Overlaps Upstream
AEC-0001897hisCCDSforward21814302182500Matches
AEC-0001898hisBCDSforward21825002183567Overlaps Downstream
AEC-0001899hisHCDSforward21835672184157Downstream
AEC-0001900hisACDSforward21841572184894Downstream
AEC-0001901hisFCDSforward21848762185652Downstream
AEC-0001902hisICDSforward21856462186257Downstream
AEC-0001903cldCDScomplement21863532187333Downstream
AEC-0001904ugdCDScomplement21874792188645Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948