Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001903 (cld) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001903 showshow history
Names
cld ECDH10B_2175
Product
regulator of length of O-antigen component of lipopolysaccharide chains
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2186353 2187333 981 327
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003856 (IPR003856 Polysaccharide chain length determinant N-terminal domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cld Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006731
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2175 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product regulator of length of O-antigen component of lipopolysaccharide chains Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003856 Polysaccharide chain length determinant N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR003856
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006731 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006731
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002870 cld CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003007 cld CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003519 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004983 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002088 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009361 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001977 cld CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007259 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008402 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008019 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078688 cld CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010367 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006386 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002307 wzz CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006755 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004382 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006360 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010630 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008839 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009752 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007800 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008138 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005646 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009460 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009190 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009663 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006834 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008988 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026913 cld CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004848 wzzB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006731 wzzB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002082 cld CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002341 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001032 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132832 cld CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001982 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002307 cld CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006373 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000837 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002452 wzzB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006684 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006622 wzzB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006296 wzzB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004337 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006667 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005967 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006413 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004049 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005796 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006621 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007651 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000792 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000792 cld CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000961 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006856 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006307 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006386 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005609 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109628 cld CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082507 cld CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096661 cld CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007203 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004715 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005355 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000930 wzzB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006606 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003751 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002551 wzzB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073325 cld CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088375 cld CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002241 wzzB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002302 cld CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2181353 to 2192333
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001896hisDCDSforward21801292181433Downstream
AEC-0001897hisCCDSforward21814302182500Downstream
AEC-0001898hisBCDSforward21825002183567Downstream
AEC-0001899hisHCDSforward21835672184157Downstream
AEC-0001900hisACDSforward21841572184894Downstream
AEC-0001901hisFCDSforward21848762185652Downstream
AEC-0001902hisICDSforward21856462186257Downstream
AEC-0001903cldCDScomplement21863532187333Matches
AEC-0001904ugdCDScomplement21874792188645Upstream
AEC-0001905gndCDScomplement21888942190300Upstream
AEC-0004081wbbL_2CDSpcomplement21904282190709Upstream
AEC-0004532wbbLpseudogenecomplement21904282190776(Interval #2) Upstream
AEC-0000035IS5.9repeat_regioncomplement21907812191975Upstream
AEC-0001906insH-7CDScomplement21909272191943Upstream
AEC-0001907wbbL_1CDSpcomplement21919482192421Upstream
AEC-0004532wbbLpseudogenecomplement21919762192421(Interval #1) Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948