Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001905 (gnd) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001905 showshow history
Names
gnd ECDH10B_2177
Product
gluconate-6-phosphate dehydrogenase, decarboxylating
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2188894 2190300 1407 469
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Jul 2009
Automated Process Approved IPR012284 (IPR012284 (DEPRECATED) Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension) Jul 2009
Automated Process Approved IPR006113 (IPR006113 6-phosphogluconate dehydrogenase, decarboxylating) Jul 2009
Automated Process Approved IPR006184 (IPR006184 6-phosphogluconate-binding site) Jul 2009
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR006183 (IPR006183 6-phosphogluconate dehydrogenase) Jul 2009
Automated Process Approved IPR006115 (IPR006115 6-phosphogluconate dehydrogenase, NADP-binding) Jul 2009
Automated Process Approved IPR006114 (IPR006114 6-phosphogluconate dehydrogenase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gnd Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006737
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2177 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product gluconate-6-phosphate dehydrogenase, decarboxylating Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006184 6-phosphogluconate-binding site Protein Sequence Similarity - InterPro Domain: IPR006184
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006113 6-phosphogluconate dehydrogenase, decarboxylating Protein Sequence Similarity - InterPro Domain: IPR006113
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006183 6-phosphogluconate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006183
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006114 6-phosphogluconate dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006114
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Protein Sequence Similarity - InterPro Domain: IPR006115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012284 (DEPRECATED) Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension Protein Sequence Similarity - InterPro Domain: IPR012284
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006737 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006737
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000347 gnd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000314 gnd CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046981 gnd CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001398 gnd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003517 gnd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004985 gnd CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002090 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009359 gnd CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001979 gnd CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007257 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008398 gnd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008017 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078690 gnd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010374 gnd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006388 gnd CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002309 gnd CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006757 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004384 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006362 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010632 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008841 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009750 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007802 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008136 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005648 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009463 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009192 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009665 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006832 gnd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008990 gnd CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026915 gnd CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004850 gnd CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006855 gnd CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006737 gnd CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002084 gnd CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002343 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001030 gnd CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132834 gnd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001979 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002309 gnd CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061700 gnd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000841 gnd CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001580 gnd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004176 gnd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006375 gnd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000835 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002454 gnd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006687 gnd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006629 gnd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006303 gnd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004335 gnd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006669 gnd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005969 gnd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006415 gnd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004051 gnd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005798 gnd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006623 gnd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007649 gnd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000790 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000790 gnd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000958 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006858 gnd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006309 gnd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006388 gnd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005611 gnd CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109631 gnd CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082505 gnd CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096665 gnd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007201 gnd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004713 gnd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005357 gnd CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000936 gnd CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006603 gnd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003749 gnd CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002549 gnd CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073327 gnd CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256033 gnd CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002243 gnd CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002304 gnd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000443 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007968 gnd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000525 gnd CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001360 gnd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001328 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237675 gnd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007297 gnd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001019 gnd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005670 gnd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001826 gnd CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120406 gnd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005676 gnd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004368 gnd CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008966 gnd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004906 gnd CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032361 gnd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007760 gnd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002931 gnd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001716 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006574 gnd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006419 gnd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001625 gnd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001975 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003004 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2183894 to 2195300
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001899hisHCDSforward21835672184157Downstream
AEC-0001900hisACDSforward21841572184894Downstream
AEC-0001901hisFCDSforward21848762185652Downstream
AEC-0001902hisICDSforward21856462186257Downstream
AEC-0001903cldCDScomplement21863532187333Downstream
AEC-0001904ugdCDScomplement21874792188645Downstream
AEC-0001905gndCDScomplement21888942190300Matches
AEC-0004081wbbL_2CDSpcomplement21904282190709Upstream
AEC-0004532wbbLpseudogenecomplement21904282190776(Interval #2) Upstream
AEC-0000035IS5.9repeat_regioncomplement21907812191975Upstream
AEC-0001906insH-7CDScomplement21909272191943Upstream
AEC-0001907wbbL_1CDSpcomplement21919482192421Upstream
AEC-0004532wbbLpseudogenecomplement21919762192421(Interval #1) Upstream
AEC-0001908wbbKCDScomplement21924232193541Upstream
AEC-0001909wbbJCDScomplement21935262194116Upstream
AEC-0001910wbbICDScomplement21940972195089Upstream
AEC-0001911wbbHCDScomplement21950922196258Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948