Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001908 (wbbK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001908 showshow history
Names
wbbK ECDH10B_2182
Product
lipopolysaccharide biosynthesis protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2192423 2193541 1119 373
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001296 (IPR001296 Glycosyl transferase, family 1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001296
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wbbK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006747
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2182 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lipopolysaccharide biosynthesis protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001296 Glycosyl transferase, family 1 Protein Sequence Similarity - InterPro Domain: IPR001296
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006747 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006747
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001296
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0011311 wbbK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0012722 wbbK CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006747 wbbK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002089 wbbK CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2187423 to 2198541
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001904ugdCDScomplement21874792188645Downstream
AEC-0001905gndCDScomplement21888942190300Downstream
AEC-0004081wbbL_2CDSpcomplement21904282190709Downstream
AEC-0004532wbbLpseudogenecomplement21904282190776(Interval #2) Downstream
AEC-0000035IS5.9repeat_regioncomplement21907812191975Downstream
AEC-0001906insH-7CDScomplement21909272191943Downstream
AEC-0001907wbbL_1CDSpcomplement21919482192421Downstream
AEC-0004532wbbLpseudogenecomplement21919762192421(Interval #1) Downstream
AEC-0001908wbbKCDScomplement21924232193541Matches
AEC-0001909wbbJCDScomplement21935262194116Overlaps Upstream
AEC-0001910wbbICDScomplement21940972195089Upstream
AEC-0001911wbbHCDScomplement21950922196258Upstream
AEC-0001912glfCDScomplement21962582197361Upstream
AEC-0001913rfbXCDScomplement21973692198616Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948