Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001909 (wbbJ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001909 showshow history
Names
wbbJ ECDH10B_2183
Product
predicted acyl transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2193526 2194116 591 197
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011004 (IPR011004 Trimeric LpxA-like superfamily) Jul 2009
Automated Process Approved IPR001451 (IPR001451 Hexapeptide repeat) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011004
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wbbJ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006749
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2183 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted acyl transferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001451 Hexapeptide repeat Protein Sequence Similarity - InterPro Domain: IPR001451
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011004 Trimeric LpxA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011004
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006749 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006749
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011004
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0008688 wbbJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0009801 wbbJ CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006749 wbbJ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002090 wbbJ CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2188526 to 2199116
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001904ugdCDScomplement21874792188645Downstream
AEC-0001905gndCDScomplement21888942190300Downstream
AEC-0004081wbbL_2CDSpcomplement21904282190709Downstream
AEC-0004532wbbLpseudogenecomplement21904282190776(Interval #2) Downstream
AEC-0000035IS5.9repeat_regioncomplement21907812191975Downstream
AEC-0001906insH-7CDScomplement21909272191943Downstream
AEC-0001907wbbL_1CDSpcomplement21919482192421Downstream
AEC-0004532wbbLpseudogenecomplement21919762192421(Interval #1) Downstream
AEC-0001908wbbKCDScomplement21924232193541Overlaps Downstream
AEC-0001909wbbJCDScomplement21935262194116Matches
AEC-0001910wbbICDScomplement21940972195089Overlaps Upstream
AEC-0001911wbbHCDScomplement21950922196258Upstream
AEC-0001912glfCDScomplement21962582197361Upstream
AEC-0001913rfbXCDScomplement21973692198616Upstream
AEC-0001914rfbCCDScomplement21986132199170Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948