Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001912 (glf) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001912 showshow history
Names
glf ECDH10B_2186
Product
UDP-galactopyranose mutase, FAD/NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2196258 2197361 1104 368
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR004379 (IPR004379 UDP-galactopyranose mutase) Jul 2009
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Automated Process Approved IPR015899 (IPR015899 UDP-galactopyranose mutase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008767 UDP-galactopyranose mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glf Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006755
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2186 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-galactopyranose mutase, FAD/NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004379 UDP-galactopyranose mutase Protein Sequence Similarity - InterPro Domain: IPR004379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015899 UDP-galactopyranose mutase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015899
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006755 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006755
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008767 UDP-galactopyranose mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005281 glf CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005245 glf CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001394 glf CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006755 glf CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002093 glf CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003715 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004171 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2191258 to 2202361
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000035IS5.9repeat_regioncomplement21907812191975Downstream
AEC-0001906insH-7CDScomplement21909272191943Downstream
AEC-0001907wbbL_1CDSpcomplement21919482192421Downstream
AEC-0004532wbbLpseudogenecomplement21919762192421(Interval #1) Downstream
AEC-0001908wbbKCDScomplement21924232193541Downstream
AEC-0001909wbbJCDScomplement21935262194116Downstream
AEC-0001910wbbICDScomplement21940972195089Downstream
AEC-0001911wbbHCDScomplement21950922196258Overlaps Downstream
AEC-0001912glfCDScomplement21962582197361Matches
AEC-0001913rfbXCDScomplement21973692198616Upstream
AEC-0001914rfbCCDScomplement21986132199170Upstream
AEC-0001915rfbACDScomplement21991702200051Upstream
AEC-0001916rfbDCDScomplement22001092201008Upstream
AEC-0001917rfbBCDScomplement22010082202093Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948