Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001914 (rfbC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001914 showshow history
Names
rfbC ECDH10B_2188
Product
dTDP-4-deoxyrhamnose-3,5-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2198613 2199170 558 186
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000888 (IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related) Jul 2009
Automated Process Approved IPR014710 (IPR014710 RmlC-like jelly roll fold) Jul 2009
Automated Process Approved IPR011051 (IPR011051 RmlC-like cupin domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfbC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006759
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2188 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dTDP-4-deoxyrhamnose-3,5-epimerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014710 RmlC-like jelly roll fold Protein Sequence Similarity - InterPro Domain: IPR014710
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011051 RmlC-like cupin domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011051
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related Protein Sequence Similarity - InterPro Domain: IPR000888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006759 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006759
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003716 rfbC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003503 rfbC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020461 rfbC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001983 rmlC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008011 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006766 rfbC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006759 rfbC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002095 rfbC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061697 rfbC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000817 rfbC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004173 rfbC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006388 rfbC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006701 rfbC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006672 rfbC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006344 rfbC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006682 rfbC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005982 rfbC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004067 rfbC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005814 rfbC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000775 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000772 rfbC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000943 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006871 rfbC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006322 rfbC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006406 rfbC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005629 rfbC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109670 rfbC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082491 rfbC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096700 rfbC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004704 rfbC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005370 rfbC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000943 rfbC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006596 rfbC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002544 rfbC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073338 rfbC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088386 rfbC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002249 rfbC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2193613 to 2204170
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001909wbbJCDScomplement21935262194116Downstream
AEC-0001910wbbICDScomplement21940972195089Downstream
AEC-0001911wbbHCDScomplement21950922196258Downstream
AEC-0001912glfCDScomplement21962582197361Downstream
AEC-0001913rfbXCDScomplement21973692198616Overlaps Downstream
AEC-0001914rfbCCDScomplement21986132199170Matches
AEC-0001915rfbACDScomplement21991702200051Overlaps Upstream
AEC-0001916rfbDCDScomplement22001092201008Upstream
AEC-0001917rfbBCDScomplement22010082202093Upstream
AEC-0001918galFCDScomplement22024662203359Upstream
AEC-0001919wcaMCDScomplement22035342204928Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948