Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001915 (rfbA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001915 showshow history
Names
rfbA ECDH10B_2189
Product
glucose-1-phosphate thymidylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2199170 2200051 882 294
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005907 (IPR005907 Glucose-1-phosphate thymidylyltransferase, short form) Jul 2009
Automated Process Approved IPR005835 (IPR005835 Nucleotidyl transferase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045226 extracellular polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008879 glucose-1-phosphate thymidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfbA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006762
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2189 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glucose-1-phosphate thymidylyltransferase Published Sequence Analysis - PubMed ID: 7517391 Mar 2007
Protein Family
Automated Process Approved protein family IPR005907 Glucose-1-phosphate thymidylyltransferase, short form Protein Sequence Similarity - InterPro Domain: IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005835 Nucleotidyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006762 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006762
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0045226 extracellular polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008879 glucose-1-phosphate thymidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000065 rfbA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000064 rfbA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001984 rmlA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007247 rmlA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008010 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006767 rfbA1 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006762 rfbA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002096 rfbA CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002317 rfbA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006389 rfbA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006702 rfbA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006674 rfbA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006346 rfbA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004319 rfbA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006683 rfbA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005983 rfbA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006429 rfbA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004068 rfbA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005815 rfbA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006640 rfbA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007632 rfbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000774 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000771 rfbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000942 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006872 rfbA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006323 rfbA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006407 rfbA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005630 rfbA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109672 rfbA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082490 rfbA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096702 rfbA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004703 rfbA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005371 rfbA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000944 rfbA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006595 rfbA1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002543 rfbA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073339 rfbA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088387 rfbA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002250 rfbA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2194170 to 2205051
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001910wbbICDScomplement21940972195089Downstream
AEC-0001911wbbHCDScomplement21950922196258Downstream
AEC-0001912glfCDScomplement21962582197361Downstream
AEC-0001913rfbXCDScomplement21973692198616Downstream
AEC-0001914rfbCCDScomplement21986132199170Overlaps Downstream
AEC-0001915rfbACDScomplement21991702200051Matches
AEC-0001916rfbDCDScomplement22001092201008Upstream
AEC-0001917rfbBCDScomplement22010082202093Upstream
AEC-0001918galFCDScomplement22024662203359Upstream
AEC-0001919wcaMCDScomplement22035342204928Upstream
AEC-0001920wcaLCDScomplement22049392206159Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948