Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001916 (rfbD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001916 showshow history
Names
rfbD ECDH10B_2190
Product
dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2200109 2201008 900 300
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR005913 (IPR005913 dTDP-4-dehydrorhamnose reductase family) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0045226 extracellular polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005913
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008831 dTDP-4-dehydrorhamnose reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005913
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfbD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006764
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2190 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005913 dTDP-4-dehydrorhamnose reductase family Protein Sequence Similarity - InterPro Domain: IPR005913
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006764 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006764
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0045226 extracellular polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005913
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008831 dTDP-4-dehydrorhamnose reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005913
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003800 rfbD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003419 rfbD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020460 rfbD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001985 rmlD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007246 rmlD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008009 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006768 rfbD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006764 rfbD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002097 rfbD CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002318 rfbD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061696 rfbD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003716 rfbD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004172 rfbD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006390 rfbD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006703 rfbD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006677 rfbD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006348 rfbD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004318 rfbD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006684 rfbD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005984 rfbD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006430 rfbD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004069 rfbD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005816 rfbD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006641 rfbD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007631 rfbD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000773 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000770 rfbD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000941 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006873 rfbD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006324 rfbD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006408 rfbD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005631 rfbD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109674 rfbD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082489 rfbD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096706 rfbD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004702 rfbD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005372 rfbD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000945 rfbD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006594 rfbD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002542 rfbD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073340 rfbD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088388 rfbD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002251 rfbD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2195109 to 2206008
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001911wbbHCDScomplement21950922196258Downstream
AEC-0001912glfCDScomplement21962582197361Downstream
AEC-0001913rfbXCDScomplement21973692198616Downstream
AEC-0001914rfbCCDScomplement21986132199170Downstream
AEC-0001915rfbACDScomplement21991702200051Downstream
AEC-0001916rfbDCDScomplement22001092201008Matches
AEC-0001917rfbBCDScomplement22010082202093Overlaps Upstream
AEC-0001918galFCDScomplement22024662203359Upstream
AEC-0001919wcaMCDScomplement22035342204928Upstream
AEC-0001920wcaLCDScomplement22049392206159Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948