Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001917 (rfbB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001917 showshow history
Names
rfbB ECDH10B_2191
Product
dTDP-glucose 4,6 dehydratase, NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2201008 2202093 1086 362
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR005888 (IPR005888 dTDP-glucose 4,6-dehydratase) Jul 2009
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009225 nucleotide-sugar metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008460 dTDP-glucose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfbB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006766
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2191 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dTDP-glucose 4,6 dehydratase, NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005888 dTDP-glucose 4,6-dehydratase Protein Sequence Similarity - InterPro Domain: IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006766 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006766
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009225 nucleotide-sugar metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008460 dTDP-glucose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000051 rffG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000051 rffG CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004993 rfbB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001986 rfbB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007245 rmlB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008008 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006400 rfbB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006769 rfbB2 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006766 rfbB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002098 rfbB CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002319 rfbB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006391 rfbB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006704 rfbB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006679 rfbB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006350 rfbB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004317 rfbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006685 rfbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005985 rfbB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006431 rfbB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004070 rfbB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005817 rfbB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006642 rfbB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007630 rfbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000772 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000769 rfbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000940 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006874 rfbB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006325 rfbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006409 rfbB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109675 rfbB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082488 rfbB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096708 rfbB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004701 rfbB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005373 rfbB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000946 rfbB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006593 rfbB2 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002541 rfbB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073341 rfbB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088389 rfbB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002252 rfbB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2196008 to 2207093
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001911wbbHCDScomplement21950922196258Downstream
AEC-0001912glfCDScomplement21962582197361Downstream
AEC-0001913rfbXCDScomplement21973692198616Downstream
AEC-0001914rfbCCDScomplement21986132199170Downstream
AEC-0001915rfbACDScomplement21991702200051Downstream
AEC-0001916rfbDCDScomplement22001092201008Overlaps Downstream
AEC-0001917rfbBCDScomplement22010082202093Matches
AEC-0001918galFCDScomplement22024662203359Upstream
AEC-0001919wcaMCDScomplement22035342204928Upstream
AEC-0001920wcaLCDScomplement22049392206159Upstream
AEC-0001921wcaKCDScomplement22061562207436Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948