Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001924 (cpsG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001924 showshow history
Names
cpsG ECDH10B_2198
Product
phosphomannomutase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2210641 2212011 1371 457
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016055 (IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III) Jul 2009
Automated Process Approved IPR016066 (IPR016066 Alpha-D-phosphohexomutase, conserved site) Jul 2009
Automated Process Approved IPR005841 (IPR005841 Alpha-D-phosphohexomutase superfamily) Jul 2009
Automated Process Approved IPR005844 (IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I) Jul 2009
Automated Process Approved IPR005845 (IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II) Jul 2009
Automated Process Approved IPR005846 (IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III) Jul 2009
Automated Process Approved IPR005843 (IPR005843 Alpha-D-phosphohexomutase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016868 intramolecular transferase activity, phosphotransferases GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cpsG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006788
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2198 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphomannomutase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Protein Sequence Similarity - InterPro Domain: IPR005844
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Protein Sequence Similarity - InterPro Domain: IPR005845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Protein Sequence Similarity - InterPro Domain: IPR005846
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005843 Alpha-D-phosphohexomutase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005843
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005841 Alpha-D-phosphohexomutase superfamily Protein Sequence Similarity - InterPro Domain: IPR005841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016066 Alpha-D-phosphohexomutase, conserved site Protein Sequence Similarity - InterPro Domain: IPR016066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Protein Sequence Similarity - InterPro Domain: IPR016055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006788 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006788
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016868 intramolecular transferase activity, phosphotransferases GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000080 cpsG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000868 cpsG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015220 cpsG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005002 cpsG CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009342 cpsG CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001993 cpsG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007235 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008391 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008001 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006407 cpsG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006777 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009465 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007371 cpsG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006844 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006788 cpsG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002105 cpsG CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001013 cpsG CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002328 cpsG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061695 rfbK CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003668 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006398 cpsG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000826 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006711 cpsG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006698 cpsG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006369 cpsG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004310 cpsG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006692 cpsG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005992 cpsG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006438 cpsG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004077 cpsG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005824 cpsG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006649 cpsG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007623 cpsG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000765 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000762 cpsG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000933 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006881 cpsG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006332 cpsG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006416 cpsG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005639 cpsG CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109691 cpsG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082481 cpsG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096730 cpsG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004694 cpsG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005380 cpsG CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000953 cpsG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006585 cpsG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003731 cpsG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073349 cpsG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088396 cpsG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002305 cpsG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000438 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008916 manB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000533 algC CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236134 manB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005364 manB1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003114 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008479 manB1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000421 manB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125710 manB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007553 manB1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007975 manB1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002354 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005056 manB1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004558 manB1 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030740 manB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008798 manB1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001204 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003284 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005208 manB1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007043 manB1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001066 manB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003118 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003771 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2205641 to 2217011
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001920wcaLCDScomplement22049392206159Downstream
AEC-0001921wcaKCDScomplement22061562207436Downstream
AEC-0001922wzxCCDScomplement22077122209190Downstream
AEC-0001923wcaJCDScomplement22091922210586Downstream
AEC-0001924cpsGCDScomplement22106412212011Matches
AEC-0001925cpsBCDScomplement22121162213552Upstream
AEC-0001926wcaICDScomplement22135552214778Upstream
AEC-0001927nudDCDScomplement22147752215254Upstream
AEC-0001928fclCDScomplement22152572216222Upstream
AEC-0001929gmdCDScomplement22162252217346Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948