Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001928 (fcl) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001928 showshow history
Names
fcl ECDH10B_2202
Product
bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2215257 2216222 966 322
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fcl Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006801
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2202 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006801 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006801
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002451 fcl CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002739 fcl CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005007 fcl CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002110 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009337 fcl CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001997 wcaG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007231 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010193 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078712 fcl CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006411 fcl CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006782 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004498 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006387 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010657 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008866 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008553 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007827 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008111 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005674 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009841 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009217 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007376 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006807 fcl CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009015 fcl CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026942 fcl CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004871 fcl CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006801 fcl CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002109 fcl CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001009 fcl CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132862 fcl CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001951 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002333 wcaG CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003672 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006402 fcl CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000822 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002472 wcaG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006715 fcl CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006711 wcaG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006382 wcaG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004306 fcl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006696 fcl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005996 fcl CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006442 fcl CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004081 fcl CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005828 fcl CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006653 fcl CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007619 fcl CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000761 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000758 wcaG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000929 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006885 fcl CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006336 fcl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006420 fcl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005643 fcl CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109700 wcaG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082477 wcaG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096741 wcaG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007183 fcl CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004690 fcl CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005384 fcl CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000957 wcaG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006581 fcl CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003727 fcl CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073354 wcaG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088400 wcaG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002263 wcaG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002309 fcl CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008925 fcl CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001390 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236130 fcl CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005361 fcl CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003117 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008483 fcl CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007550 fcl CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002351 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004555 fcl CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030737 fcl CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001201 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003287 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005205 fcl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007046 fcl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001063 fcl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003775 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2210257 to 2221222
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001923wcaJCDScomplement22091922210586Downstream
AEC-0001924cpsGCDScomplement22106412212011Downstream
AEC-0001925cpsBCDScomplement22121162213552Downstream
AEC-0001926wcaICDScomplement22135552214778Downstream
AEC-0001927nudDCDScomplement22147752215254Downstream
AEC-0001928fclCDScomplement22152572216222Matches
AEC-0001929gmdCDScomplement22162252217346Upstream
AEC-0001930wcaFCDScomplement22173722217920Upstream
AEC-0001931wcaECDScomplement22179362218682Upstream
AEC-0001932wcaDCDScomplement22186932219910Upstream
AEC-0001933wcaCCDScomplement22198852221102Upstream
AEC-0001934wcaBCDScomplement22210992221587Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948