Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001929 (gmd) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001929 showshow history
Names
gmd ECDH10B_2203
Product
GDP-D-mannose dehydratase, NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2216225 2217346 1122 374
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006368 (IPR006368 GDP-mannose 4,6-dehydratase) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Jul 2009
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0019673 GDP-mannose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008446 GDP-mannose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gmd Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006803
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2203 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product GDP-D-mannose dehydratase, NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006368 GDP-mannose 4,6-dehydratase Protein Sequence Similarity - InterPro Domain: IPR006368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006803 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006803
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019673 GDP-mannose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008446 GDP-mannose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001844 gmd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002377 gmd CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015221 gmd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005008 gmd CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002111 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009336 gmd CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001998 gmd CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007230 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008388 gmd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010192 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078713 gmd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007661 gmd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006412 gmd CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006783 gmd CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006388 gmd CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004872 gmd CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006803 gmd CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002110 gmd CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001008 gmd CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002334 gmd CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003673 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006403 gmd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000821 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002473 gmd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006716 gmd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006713 gmd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006384 gmd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004305 gmd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006697 gmd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005997 gmd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006443 gmd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004082 gmd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005829 gmd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006654 gmd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007618 gmd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000760 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000757 gmd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000928 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006886 gmd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006337 gmd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006421 gmd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005644 gmd CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109702 gmd CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082476 gmd CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096744 gmd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007182 gmd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004689 gmd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005385 gmd CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000958 gmd CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006580 gmd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003726 gmd CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073355 gmd CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088401 gmd CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002264 gmd CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002310 gmd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000439 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008926 gmd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000531 gmd_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001392 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003118 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002349 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001200 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003288 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007047 gmd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001062 gmd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003776 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2211225 to 2222346
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001924cpsGCDScomplement22106412212011Downstream
AEC-0001925cpsBCDScomplement22121162213552Downstream
AEC-0001926wcaICDScomplement22135552214778Downstream
AEC-0001927nudDCDScomplement22147752215254Downstream
AEC-0001928fclCDScomplement22152572216222Downstream
AEC-0001929gmdCDScomplement22162252217346Matches
AEC-0001930wcaFCDScomplement22173722217920Upstream
AEC-0001931wcaECDScomplement22179362218682Upstream
AEC-0001932wcaDCDScomplement22186932219910Upstream
AEC-0001933wcaCCDScomplement22198852221102Upstream
AEC-0001934wcaBCDScomplement22210992221587Upstream
AEC-0001935wcaACDScomplement22215902222429Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948