Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001965 (gatD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001965 showshow history
Names
gatD ECDH10B_2244
Product
galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2260865 2261905 1041 347
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002085 (IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type) Jul 2009
Automated Process Approved IPR002328 (IPR002328 Alcohol dehydrogenase, zinc-type, conserved site) Jul 2009
Automated Process Approved IPR011032 (IPR011032 GroES-like superfamily) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR013154 (IPR013154 Alcohol dehydrogenase, N-terminal) Jul 2009
Automated Process Approved IPR013149 (IPR013149 Alcohol dehydrogenase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006924
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2244 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Protein Sequence Similarity - InterPro Domain: IPR002328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011032 GroES-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011032
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013149 Alcohol dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013149
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013154 Alcohol dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type Protein Sequence Similarity - InterPro Domain: IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006924 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006924
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003252 gatD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003535 gatD CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005046 gatD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002147 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009298 gatD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002047 gatD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007195 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008559 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008355 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078750 gatD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007708 gatD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006488 gatD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002379 gatD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006816 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005782 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006470 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0004997 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008950 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008251 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007910 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008554 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005757 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008293 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009486 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007416 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006724 gatD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009326 gatD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026980 gatD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004914 gatD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006900 gatD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006924 gatD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002151 gatD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002400 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000972 gatD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132899 gatD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001915 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002371 gatD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007615 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003741 gadD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007867 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010092 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009548 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007194 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007915 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006834 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005834 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006297 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007009 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007876 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005188 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003163 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003129 gatD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004087 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008036 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007292 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007521 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007193 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112264 gatD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084901 gatD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100139 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005970 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006050 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004603 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000990 gatD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006544 gatD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003646 gatD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002606 gatD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073398 gatD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088430 gatD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002343 gatD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2255865 to 2266905
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001957yegQCDSforward22547002256061Downstream
AEC-0004264ryeEncRNAforward22561462256232Downstream
AEC-0001958ogrKCDScomplement22563342256552Downstream
AEC-0001959yegRCDScomplement22570212257338Downstream
AEC-0001960yegSCDSforward22577442258643Downstream
AEC-0001961gatR_1CDScomplement22587252259171Downstream
AEC-0000036IS3.5repeat_regionforward22592032260460Downstream
AEC-0001962insE-5CDSforward22592592259567Downstream
AEC-0001963insF-5CDSforward22595642260430Downstream
AEC-0001964gatR_2CDScomplement22604272260765Downstream
AEC-0001965gatDCDScomplement22608652261905Matches
AEC-0001966gatCCDScomplement22619532263308Upstream
AEC-0001967gatBCDScomplement22633122263596Upstream
AEC-0001968gatACDScomplement22636272264079Upstream
AEC-0001969gatYCDScomplement22653802266234Upstream
AEC-0001970fbaBCDScomplement22665422267594Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948