Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001966 (gatC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001966 showshow history
Names
gatC ECDH10B_2245
Product
galactitol-specific enzyme IIC component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2261953 2263308 1356 452
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013014 (IPR013014 Phosphotransferase system, EIIC component, type 2) Jul 2009
Automated Process Approved IPR013853 (IPR013853 Galactitol permease IIC component) Jul 2009
Automated Process Approved IPR004703 (IPR004703 Phosphotransferase system, sugar-specific permease component) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004703
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004703
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006928
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2245 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product galactitol-specific enzyme IIC component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013853 Galactitol permease IIC component Protein Sequence Similarity - InterPro Domain: IPR013853
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004703 Phosphotransferase system, sugar-specific permease component Protein Sequence Similarity - InterPro Domain: IPR004703
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013014 Phosphotransferase system, EIIC component, type 2 Protein Sequence Similarity - InterPro Domain: IPR013014
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006928 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006928
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004703
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004703
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003255 gatC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003556 gatC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005047 gatC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002148 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009297 gatC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002048 gatC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007194 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008558 gatC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008354 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078751 gatC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007709 gatC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006489 gatC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002380 gatC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006817 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005783 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006471 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0004998 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008951 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008250 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007911 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005758 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008294 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009487 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007417 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006723 gatC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009327 gatC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026981 gatC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004915 gatC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006901 gatC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006928 gatC pseudogene
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002152 gatC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002401 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000971 gatC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132900 gatC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001914 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002372 gatC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007614 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003740 ptkC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007866 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010088 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009544 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007195 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007914 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006833 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005833 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006296 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007008 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007875 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005189 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003162 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003128 gatC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004086 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008035 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007293 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007520 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007192 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112263 gatC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084900 gatC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100136 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005971 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006051 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000991 gatC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006543 gatC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003645 gatC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073402 gatC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088433 gatC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002304 gatC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002344 gatC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2256953 to 2268308
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001959yegRCDScomplement22570212257338Downstream
AEC-0001960yegSCDSforward22577442258643Downstream
AEC-0001961gatR_1CDScomplement22587252259171Downstream
AEC-0000036IS3.5repeat_regionforward22592032260460Downstream
AEC-0001962insE-5CDSforward22592592259567Downstream
AEC-0001963insF-5CDSforward22595642260430Downstream
AEC-0001964gatR_2CDScomplement22604272260765Downstream
AEC-0001965gatDCDScomplement22608652261905Downstream
AEC-0001966gatCCDScomplement22619532263308Matches
AEC-0001967gatBCDScomplement22633122263596Upstream
AEC-0001968gatACDScomplement22636272264079Upstream
AEC-0001969gatYCDScomplement22653802266234Upstream
AEC-0001970fbaBCDScomplement22665422267594Upstream
AEC-0001971yegTCDSforward22678512269128Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948