Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001967 (gatB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001967 showshow history
Names
gatB ECDH10B_2246
Product
galactitol-specific enzyme IIB component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2263312 2263596 285 95
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013011 (IPR013011 Phosphotransferase system, EIIB component, type 2) Jul 2009
Automated Process Approved IPR003501 (IPR003501 Phosphotransferase system, EIIB component, type 2/3) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013011
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006930
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2246 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product galactitol-specific enzyme IIB component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013011 Phosphotransferase system, EIIB component, type 2 Protein Sequence Similarity - InterPro Domain: IPR013011
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003501 Phosphotransferase system, EIIB component, type 2/3 Protein Sequence Similarity - InterPro Domain: IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006930 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006930
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003501
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013011
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003226 gatB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003554 gatB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005048 gatB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002149 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009296 gatB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002049 gatB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007192 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008557 gatB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008353 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078752 gatB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007710 gatB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006490 gatB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002381 gatB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006818 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005784 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006472 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0004999 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008952 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008249 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007912 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008552 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005759 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008295 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009488 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007418 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006722 gatB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009328 gatB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026982 gatB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004916 gatB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006902 gatB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006930 gatB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002153 gatB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002402 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000970 gatB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132901 gatB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001913 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002373 gatB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007613 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003739 ptkB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007865 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010085 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009541 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007196 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007913 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006832 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005832 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006295 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007007 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007874 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005190 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003161 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003127 gatB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004085 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008034 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007294 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007519 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007191 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112262 gatB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084899 gatB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100133 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005972 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006052 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000992 gatB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006542 gatB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003644 gatB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002608 gatB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073403 gatB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088434 gatB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002305 gatB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002345 gatB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2258312 to 2268596
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001960yegSCDSforward22577442258643Downstream
AEC-0001961gatR_1CDScomplement22587252259171Downstream
AEC-0000036IS3.5repeat_regionforward22592032260460Downstream
AEC-0001962insE-5CDSforward22592592259567Downstream
AEC-0001963insF-5CDSforward22595642260430Downstream
AEC-0001964gatR_2CDScomplement22604272260765Downstream
AEC-0001965gatDCDScomplement22608652261905Downstream
AEC-0001966gatCCDScomplement22619532263308Downstream
AEC-0001967gatBCDScomplement22633122263596Matches
AEC-0001968gatACDScomplement22636272264079Upstream
AEC-0001969gatYCDScomplement22653802266234Upstream
AEC-0001970fbaBCDScomplement22665422267594Upstream
AEC-0001971yegTCDSforward22678512269128Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948