Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001968 (gatA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001968 showshow history
Names
gatA ECDH10B_2247
Product
galactitol-specific enzyme IIA component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2263627 2264079 453 151
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002178 (IPR002178 PTS EIIA type-2 domain) Jul 2009
Automated Process Approved IPR016152 (IPR016152 Phosphotransferase/anion transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016152
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006932
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2247 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product galactitol-specific enzyme IIA component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002178 PTS EIIA type-2 domain Protein Sequence Similarity - InterPro Domain: IPR002178
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016152 Phosphotransferase/anion transporter Protein Sequence Similarity - InterPro Domain: IPR016152
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006932 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006932
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016152
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003251 gatA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003553 gatA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005049 gatA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002150 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009295 gatA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002050 gatA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007191 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008556 gatA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008352 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078753 gatA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007711 gatA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006491 gatA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002382 gatA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006819 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005785 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006473 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005000 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008953 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008248 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007913 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008551 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005760 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008296 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009489 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007419 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006721 gatA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009329 gatA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026983 gatA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004917 gatA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006903 gatA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006932 gatA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002403 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000969 gatA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132902 gatA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001912 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002374 gatA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000993 gatA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006541 gatA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003643 gatA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073404 gatA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088435 gatA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2258627 to 2269079
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001960yegSCDSforward22577442258643Downstream
AEC-0001961gatR_1CDScomplement22587252259171Downstream
AEC-0000036IS3.5repeat_regionforward22592032260460Downstream
AEC-0001962insE-5CDSforward22592592259567Downstream
AEC-0001963insF-5CDSforward22595642260430Downstream
AEC-0001964gatR_2CDScomplement22604272260765Downstream
AEC-0001965gatDCDScomplement22608652261905Downstream
AEC-0001966gatCCDScomplement22619532263308Downstream
AEC-0001967gatBCDScomplement22633122263596Downstream
AEC-0001968gatACDScomplement22636272264079Matches
AEC-0001969gatYCDScomplement22653802266234Upstream
AEC-0001970fbaBCDScomplement22665422267594Upstream
AEC-0001971yegTCDSforward22678512269128Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948