Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001969 (gatY) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001969 showshow history
Names
gatY ECDH10B_2249
Product
D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2265380 2266234 855 285
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Automated Process Approved IPR000771 (IPR000771 Fructose-bisphosphate aldolase, class-II) Jul 2009
Automated Process Approved IPR011288 (IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019512 lactose catabolic process via tagatose-6-phosphate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gatY Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006938
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2249 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000771 Fructose-bisphosphate aldolase, class-II Protein Sequence Similarity - InterPro Domain: IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY Protein Sequence Similarity - InterPro Domain: IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006938 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006938
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019512 lactose catabolic process via tagatose-6-phosphate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000059 kbaY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000109 kbaY CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005051 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002152 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009293 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002052 gatY CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007189 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008554 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008350 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078755 gatY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007713 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006493 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002384 gatY CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006821 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005787 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006475 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005002 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008955 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008246 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007915 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008549 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005762 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008298 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009491 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007421 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006719 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009331 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026985 gatY CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004919 gatY_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006905 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006938 gatY CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002159 gatY CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002405 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000967 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132904 gatY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001910 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002376 gatY CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060557 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004512 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002399 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007610 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003736 gatY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007862 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010078 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009534 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007202 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007910 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006829 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005826 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006292 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007004 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007871 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005196 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003155 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003121 gatY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004079 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008028 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007516 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007188 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112248 gatY CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084893 gatY CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100115 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005975 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006055 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004606 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000995 gatY CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006539 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003640 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002613 gatY CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073406 gatY CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088437 gatY CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002308 gatY CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002350 gatY CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2260380 to 2271234
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000036IS3.5repeat_regionforward22592032260460Downstream
AEC-0001963insF-5CDSforward22595642260430Downstream
AEC-0001964gatR_2CDScomplement22604272260765Downstream
AEC-0001965gatDCDScomplement22608652261905Downstream
AEC-0001966gatCCDScomplement22619532263308Downstream
AEC-0001967gatBCDScomplement22633122263596Downstream
AEC-0001968gatACDScomplement22636272264079Downstream
AEC-0001969gatYCDScomplement22653802266234Matches
AEC-0001970fbaBCDScomplement22665422267594Upstream
AEC-0001971yegTCDSforward22678512269128Upstream
AEC-0001972yegUCDSforward22691252270129Upstream
AEC-0001973yegVCDSforward22701262271091Upstream
AEC-0001974yegWCDScomplement22710652271811Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948