Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001977 (thiM) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001977 showshow history
Names
thiM ECDH10B_2257
Product
hydoxyethylthiazole kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2273543 2274331 789 263
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000417 (IPR000417 Hydroxyethylthiazole kinase) Jul 2009
Automated Process Approved IPR011144 (IPR011144 (DEPRECATED) Hydroxyethylthiazole kinase, monofunctional) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000417
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004417 hydroxyethylthiazole kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000417
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name thiM Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006960
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2257 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product hydoxyethylthiazole kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000417 Hydroxyethylthiazole kinase Protein Sequence Similarity - InterPro Domain: IPR000417
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011144 (DEPRECATED) Hydroxyethylthiazole kinase, monofunctional Protein Sequence Similarity - InterPro Domain: IPR011144
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0006960 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0006960
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000417
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004417 hydroxyethylthiazole kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000417
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002295 thiM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002194 thiM CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018796 thiM CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003463 thiM CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005060 thiM CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002160 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009123 thiM CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002060 thiM CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007180 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008546 thiM CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008342 thiM pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078766 thiM CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007721 thiM CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006502 thiM CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002392 thiM CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006829 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005795 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005010 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010388 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008238 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007923 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008541 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005770 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008306 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009499 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007429 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006711 thiM CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009339 thiM CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026993 thiM CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004927 thiM CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006913 thiM CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0006960 thiM CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002167 thiM CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002413 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000959 thiM CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0132912 thiM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001902 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002385 thiM CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063485 thiM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001851 thiM CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000822 thiM CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000462 thiM CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006459 thiM CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000784 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002530 thiM CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006758 thiM CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006823 thiM CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006490 thiM CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004244 thiM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006741 thiM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006041 thiM CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006496 thiM CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004139 thiM CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005888 thiM CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006697 thiM CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007566 thiM CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000705 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000705 thiM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000883 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006930 thiM CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006378 thiM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006462 thiM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005685 thiM CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109812 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082422 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096858 thiM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007133 thiM CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004638 thiM CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005429 thiM CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001003 thiM CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006531 thiM CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003632 thiM CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002622 thiM CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073414 thiM CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088443 thiM CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002316 thiM CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002358 thiM CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010329 thiM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002060 thiM CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002775 thiM CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2268543 to 2279331
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001971yegTCDSforward22678512269128Downstream
AEC-0001972yegUCDSforward22691252270129Downstream
AEC-0001973yegVCDSforward22701262271091Downstream
AEC-0001974yegWCDScomplement22710652271811Downstream
AEC-0001975yegXCDScomplement22718632272681Downstream
AEC-0001976thiDCDScomplement22727462273546Overlaps Downstream
AEC-0001977thiMCDScomplement22735432274331Matches
AEC-0001978rcnRCDScomplement22745542274826Upstream
AEC-0001979yohMCDSforward22749472275771Upstream
AEC-0001980yohNCDSforward22759902276328Upstream
AEC-0001981yehBCDScomplement22774602279940Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948