Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002000 (yehW) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002000 showshow history
Names
yehW ECDH10B_2284
Product
predicted transporter subunit: membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2304775 2305506 732 244
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yehW Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007032
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2284 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter subunit: membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007032 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007032
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002184 yehW CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002317 yehW CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003443 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005083 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002185 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009212 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002081 yehW CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007148 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006555 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005491 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078794 yehW CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009134 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005745 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002420 yehW CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006853 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000482 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006589 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005117 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010207 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008609 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008093 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009861 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005878 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009592 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010953 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009763 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008895 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009209 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027097 yehW CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004953 yehW CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006937 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007032 yehW CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002194 yehW CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002436 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000915 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133023 yehW CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000273 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002408 yehW CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006476 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000768 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002546 yehW CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006775 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006880 yehW CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006544 yehW CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004227 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006758 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006058 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006514 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004156 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005905 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006714 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007549 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000689 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000689 yehW CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000864 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006947 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006395 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006479 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005702 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109856 yehW CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082406 yehW CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096905 yehW CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007116 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004622 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005446 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001110 yehW CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006242 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003584 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002491 yehW CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073468 yehW CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088482 yehW CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002369 yehW CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002395 yehW CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001100 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008252 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002283 yehW CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002941 yehW CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002335 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236415 proW1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001108 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005295 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002172 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119218 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006051 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004739 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001911 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007707 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005291 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032736 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005442 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003341 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003001 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006492 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006773 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001307 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001569 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003401 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2299775 to 2310506
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001994yehQpseudogeneforward22981302300130Downstream
AEC-0001995yehRCDSforward23002552300716Downstream
AEC-0001996yehSCDScomplement23007562301226Downstream
AEC-0001997yehTCDScomplement23012732301992Downstream
AEC-0001998yehUCDScomplement23019892303674Downstream
AEC-0001999mlrACDSforward23038962304627Downstream
AEC-0004083yohOCDSforward23046872304794Overlaps Downstream
AEC-0002000yehWCDScomplement23047752305506Matches
AEC-0002001yehXCDScomplement23055112306437Upstream
AEC-0002002yehYCDScomplement23064302307587Upstream
AEC-0002003yehZCDScomplement23075942308511Upstream
AEC-0002004bglXCDScomplement23087222311019Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948