Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002018 (yeiT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002018 showshow history
Names
yeiT ECDH10B_2303
Product
predicted oxidoreductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2323063 2324301 1239 413
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009051 (IPR009051 Alpha-helical ferredoxin) Jul 2009
Automated Process Approved IPR000759 (IPR000759 (DEPRECATED) Adrenodoxin reductase) Jul 2009
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Automated Process Approved IPR000103 (IPR000103 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, class-II) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009051
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009051
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yeiT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007096
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2303 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted oxidoreductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000759 (DEPRECATED) Adrenodoxin reductase Protein Sequence Similarity - InterPro Domain: IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009051 Alpha-helical ferredoxin Protein Sequence Similarity - InterPro Domain: IPR009051
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000103 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, class-II Protein Sequence Similarity - InterPro Domain: IPR000103
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007096 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007096
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009051
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009051
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003135 yeiT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003572 yeiT CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003419 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005101 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002203 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009193 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002097 yeiT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007125 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006573 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005473 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078815 yeiT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009764 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005763 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002437 yeiT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006877 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000505 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006615 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005142 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006583 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008634 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008118 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005814 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005902 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009617 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007185 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009356 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008870 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009234 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027123 yeiT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004974 preT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006954 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007096 preT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002212 yeiT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002453 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002292 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133046 yeiT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000250 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002426 yeiT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006501 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002571 yeiT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006800 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006966 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006624 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004202 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006783 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006083 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006539 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004182 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005931 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006739 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007524 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000665 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000665 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000836 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006971 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006421 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006504 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005727 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109919 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082382 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096976 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007090 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004596 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005471 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001087 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006222 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003603 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002469 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073489 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088499 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002386 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2318063 to 2329301
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002012dusCCDScomplement23184682319415Upstream
AEC-0002013yohJCDSforward23196542320052Upstream
AEC-0002014yohKCDSforward23200492320744Upstream
AEC-0002015cddCDSforward23208742321758Upstream
AEC-0002016sanACDSforward23219082322627Upstream
AEC-0002017yeiSCDSforward23226302322869Upstream
AEC-0002018yeiTCDSforward23230632324301Matches
AEC-0002019yeiACDSforward23242952325530Overlaps Downstream
AEC-0002020mglCCDScomplement23257732326783Downstream
AEC-0002021mglBCDScomplement23283612329359Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948