Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002019 (yeiA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002019 showshow history
Names
yeiA ECDH10B_2304
Product
predicted oxidoreductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2324295 2325530 1236 412
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Automated Process Approved IPR005720 (IPR005720 Dihydroorotate dehydrogenase domain) Jul 2009
Automated Process Approved IPR012135 (IPR012135 Dihydroorotate dehydrogenase, class 1/ 2) Jul 2009
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006222 UMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004152 dihydroorotate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004158 dihydroorotate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yeiA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007098
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2304 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted oxidoreductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005720 Dihydroorotate dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR005720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 Protein Sequence Similarity - InterPro Domain: IPR012135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007098 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007098
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006222 UMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004158 dihydroorotate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005720
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004152 dihydroorotate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003134 yeiA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003636 yeiA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003418 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005102 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002204 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009192 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002098 yeiA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007124 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006574 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005472 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078816 yeiA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009765 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005764 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002438 yeiA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006878 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000506 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006616 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005143 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006584 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008635 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008119 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005813 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005903 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009618 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007186 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009357 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008869 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009235 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027124 yeiA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004975 preA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006955 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007098 preA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002213 yeiA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002454 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002293 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133047 yeiA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000249 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002427 yeiA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006502 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002572 yeiA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006801 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006970 yeiA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006628 yeiA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004201 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006784 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006084 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006540 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004183 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005932 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006740 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007523 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000664 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000664 yeiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000835 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006972 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006422 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006505 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005728 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0096979 yeiA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007089 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004595 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005472 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006221 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003604 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002413 yeiA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2319295 to 2330530
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002012dusCCDScomplement23184682319415Upstream
AEC-0002013yohJCDSforward23196542320052Upstream
AEC-0002014yohKCDSforward23200492320744Upstream
AEC-0002015cddCDSforward23208742321758Upstream
AEC-0002016sanACDSforward23219082322627Upstream
AEC-0002017yeiSCDSforward23226302322869Upstream
AEC-0002018yeiTCDSforward23230632324301Overlaps Upstream
AEC-0002019yeiACDSforward23242952325530Matches
AEC-0002020mglCCDScomplement23257732326783Downstream
AEC-0002021mglBCDScomplement23283612329359Downstream
AEC-0002022galSCDScomplement23296392330679Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948