Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002026 (cirA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002026 showshow history
Names
cirA ECDH10B_2312
Product
ferric iron-catecholate outer membrane transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2333789 2335780 1992 664
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012910 (IPR012910 TonB-dependent receptor, plug domain) Jul 2009
Automated Process Approved IPR000531 (IPR000531 TonB-dependent receptor-like, beta-barrel) Jul 2009
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Jul 2009
Automated Process Approved IPR010917 (IPR010917 TonB-dependent receptor, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cirA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007126
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2312 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ferric iron-catecholate outer membrane transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012910 TonB-dependent receptor, plug domain Protein Sequence Similarity - InterPro Domain: IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000531 TonB-dependent receptor-like, beta-barrel Protein Sequence Similarity - InterPro Domain: IPR000531
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010917 TonB-dependent receptor, conserved site Protein Sequence Similarity - InterPro Domain: IPR010917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007126 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007126
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001712 cirA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000071 cirA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003410 cirA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005111 cirA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002213 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009183 cirA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002106 cirA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007114 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006582 cirA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005463 cirA pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078826 cirA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009773 cirA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005772 cirA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002446 cirA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006887 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000516 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006627 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005154 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006595 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008646 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008130 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005802 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005914 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009629 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007197 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009368 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008858 cirA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009244 cirA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027132 cirA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004985 cirA_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006963 cirA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007126 cirA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002221 cirA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002462 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002301 cirA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133055 cirA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000239 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002436 cirA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060691 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002883 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003520 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002904 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006514 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000721 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002588 cirA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006813 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007013 cirA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006668 cirA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004189 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006796 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006096 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006552 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004195 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005944 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006753 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007511 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000652 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000652 cirA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000818 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006984 cirA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006434 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006517 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005740 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109964 cirA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082369 cirA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097022 cirA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004583 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005484 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002395 cirA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002421 cirA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001227 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004433 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001256 cirA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003834 yiuR CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003344 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237290 yiuR CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005652 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001253 yiuR CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005421 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002071 yiuR CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119626 yiuR CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006180 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004614 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002542 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005272 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005161 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032613 yiuR CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005310 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003203 yiuR CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002860 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006362 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006652 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001416 yiuR CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001707 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003259 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2328789 to 2340780
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002021mglBCDScomplement23283612329359Downstream
AEC-0002022galSCDScomplement23296392330679Downstream
AEC-0002023yeiBCDScomplement23308212331978Downstream
AEC-0002024folECDScomplement23319952332663Downstream
AEC-0002025yeiGCDSforward23329212333757Downstream
AEC-0002026cirACDScomplement23337892335780Matches
AEC-0002027lysPCDScomplement23360742337543Upstream
AEC-0002028yeiECDScomplement23377482338629Upstream
AEC-0002029yeiHCDSforward23387282339777Upstream
AEC-0002030nfoCDSforward23398512340708Upstream
AEC-0002031yeiICDSforward23407112341799Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948