Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002027 (lysP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002027 showshow history
Names
lysP ECDH10B_2313
Product
lysine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2336074 2337543 1470 490
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Jul 2009
Automated Process Approved IPR004840 (IPR004840 Amino acid permease, conserved site) Jul 2009
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lysP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007131
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2313 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lysine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004840 Amino acid permease, conserved site Protein Sequence Similarity - InterPro Domain: IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007131 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007131
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001290 lysP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000957 lysP CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020023 lysP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001333 lysP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003408 lysP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005112 lysP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002214 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009182 lysP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002107 lysP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007113 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006583 lysP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005462 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078827 lysP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009774 lysP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005773 lysP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002447 lysP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006889 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000518 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006628 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005155 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006596 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008647 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008132 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005801 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005915 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009631 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007199 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009369 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008857 lysP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009245 lysP CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027133 lysP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004987 lysP CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006965 lysP CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007131 lysP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002222 lysP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002464 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002302 lysP CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133056 lysP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000237 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002437 lysP CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062992 lysP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001519 lysP CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001890 lysP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000112 lysP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006515 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000720 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002589 lysP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006814 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007019 lysP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006674 lysP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004186 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006797 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006097 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006553 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004196 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005945 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006754 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007510 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000651 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000651 lysP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000816 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006985 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006435 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006518 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005741 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109968 lysP CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082368 lysP CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097027 lysP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007075 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004582 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005485 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002408 lysP CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006207 lysP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003539 lysP CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002430 lysP CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073499 lysP CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256053 lysP CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002396 lysP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002422 lysP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001230 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004420 cadR CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001254 cadR CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003833 lysP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003343 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237306 lysP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005648 lysP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001247 lysP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005417 lysP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002075 lysP CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119592 lysP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006176 lysP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004618 lysP CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005276 lysP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005165 lysP CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032617 lysP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005314 lysP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003209 lysP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002867 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006366 lysP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006656 lysP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001412 lysP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001701 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003265 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2331074 to 2342543
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002023yeiBCDScomplement23308212331978Downstream
AEC-0002024folECDScomplement23319952332663Downstream
AEC-0002025yeiGCDSforward23329212333757Downstream
AEC-0002026cirACDScomplement23337892335780Downstream
AEC-0002027lysPCDScomplement23360742337543Matches
AEC-0002028yeiECDScomplement23377482338629Upstream
AEC-0002029yeiHCDSforward23387282339777Upstream
AEC-0002030nfoCDSforward23398512340708Upstream
AEC-0002031yeiICDSforward23407112341799Upstream
AEC-0002032yeiJCDScomplement23419062343156Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948