Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002033 (rihB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002033 showshow history
Names
rihB ECDH10B_2319
Product
ribonucleoside hydrolase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2343256 2344197 942 314
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001910 (IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain) Jul 2009
Automated Process Approved IPR015910 (IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rihB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007156
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2319 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribonucleoside hydrolase 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Protein Sequence Similarity - InterPro Domain: IPR001910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site Protein Sequence Similarity - InterPro Domain: IPR015910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007156 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007156
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003280 rihB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003333 rihB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019087 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003481 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005118 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002220 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009176 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002111 rihB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007106 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006589 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005456 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078832 rihB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009780 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005779 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002453 rihB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006895 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000524 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006634 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005161 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006602 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010726 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008138 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005795 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005921 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010747 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007206 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009376 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008851 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009252 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027139 rihB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0004994 rihB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006972 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007156 rihB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002228 rihB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002470 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002308 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133062 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000231 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002443 yeiK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000714 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002402 yeiK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006201 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003532 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002424 yeiK CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073505 yeiK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088512 yeiK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002402 yeiK CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002428 rihB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2338256 to 2349197
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002028yeiECDScomplement23377482338629Downstream
AEC-0002029yeiHCDSforward23387282339777Downstream
AEC-0002030nfoCDSforward23398512340708Downstream
AEC-0002031yeiICDSforward23407112341799Downstream
AEC-0002032yeiJCDScomplement23419062343156Downstream
AEC-0002033rihBCDScomplement23432562344197Matches
AEC-0002034yeiLCDSforward23443662345025Upstream
AEC-0002035yeiMCDScomplement23450962346346Upstream
AEC-0002036yeiNCDScomplement23464402347378Upstream
AEC-0002037yeiCCDScomplement23473662348307Upstream
AEC-0002038fruACDScomplement23487302350421Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948