Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002040 (setB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002040 showshow history
Names
setB ECDH10B_2327
Product
lactose/glucose efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2352873 2354054 1182 394
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR004750 (IPR004750 Sugar efflux) Jul 2009
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015542 (DEPRECATED) sugar efflux transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name setB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007184
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2327 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lactose/glucose efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004750 Sugar efflux Protein Sequence Similarity - InterPro Domain: IPR004750
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007184 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007184
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015542 (DEPRECATED) sugar efflux transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004750
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000073 setA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000070 setA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020031 setB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000778 sotA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003394 setB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005127 setB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002228 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009167 setB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002119 yeiO CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007096 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006599 setB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005447 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078842 setB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005789 setB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002461 setB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006904 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000533 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006644 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005170 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006611 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007687 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008147 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005786 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005930 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010756 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007216 setB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009385 setB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010353 setB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009261 setB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027147 setB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005003 setB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006981 setB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007184 setB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002236 setB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002479 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002317 setB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133070 setB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000222 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002453 yeiO CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062999 sotA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001524 sotA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000707 sotA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000106 sotA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006525 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000709 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002596 setB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006824 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007054 setB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006708 setB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009061 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006807 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006108 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006561 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004205 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005954 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006764 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007501 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000644 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000644 setB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000805 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006995 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006443 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006526 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005749 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0109997 setB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082361 setB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097050 setB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007065 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004572 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005495 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002389 yeiO CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006189 setB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001024 yeiO CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073514 setB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088520 setB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002410 yeiO CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002436 setB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000115 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001991 setA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000217 setA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002628 setA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001777 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243085 setA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007055 setA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005950 setA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007744 setA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033429 setA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000501 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003720 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007424 setA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000710 setA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000824 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004192 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2347873 to 2359054
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002037yeiCCDScomplement23473662348307Upstream
AEC-0002038fruACDScomplement23487302350421Upstream
AEC-0002039fruKCDScomplement23504382351376Upstream
AEC-0002040setBCDSforward23528732354054Matches
AEC-0004046yeiWCDScomplement23540512354305Overlaps Downstream
AEC-0002041yeiPCDSforward23544602355032Downstream
AEC-0002042yeiQCDSforward23552552356721Downstream
AEC-0002043yeiRCDSforward23568392357825Downstream
AEC-0002044yeiUCDSforward23578642358577Downstream
AEC-0002045sprCDSforward23589892359555Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948