Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002065 (ccmE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002065 showshow history
Names
ccmE ECDH10B_2354
Product
periplasmic heme chaperone
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2383911 2384390 480 160
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004329 (IPR004329 CcmE/CycJ protein) Jul 2009
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004329
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ccmE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007271
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2354 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product periplasmic heme chaperone Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004329 CcmE/CycJ protein Protein Sequence Similarity - InterPro Domain: IPR004329
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007271 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007271
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004329
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000119 ccmE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001299 ccmE CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001193 ccmE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003347 ccmE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005157 ccmE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002255 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009108 ccmE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002142 ccmE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007061 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006629 ccmE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005418 CcmE CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078871 ccmE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006482 ccmE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005819 ccmE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002487 ccmE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006931 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000560 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006671 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005197 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006639 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007715 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008174 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005758 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005959 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006894 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007243 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010250 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010121 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007416 ccmE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027172 ccmE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005033 ccmE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007008 ccmE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007271 ccmE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002263 ccmE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002506 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002344 ccmE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133095 ccmE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000195 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002482 ccmE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062145 ccmE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000999 ccmE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000491 ccmE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002122 ccmE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006554 ccmE CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002638 ccmE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004362 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002344 ccmE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006141 ccmE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006952 ccmE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000994 ccmE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073544 ccmE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088547 ccmE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002439 ccmE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002468 ccmE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001767 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003780 ccmE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000702 ccmE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001049 ccmE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001096 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240144 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004496 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002537 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008352 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000586 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124472 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004220 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005439 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002333 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006270 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005558 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031259 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007318 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002654 ccmE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002421 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005705 ccmE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005357 ccmE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002733 ccmE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003270 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001764 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2378911 to 2389390
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000037IS5.10repeat_regioncomplement23779292379123Downstream
AEC-0002060insH-8CDScomplement23780752379091Downstream
AEC-0002061narPCDSforward23795102380157Downstream
AEC-0002062ccmHCDScomplement23803682381420Downstream
AEC-0002063ccmGCDScomplement23814172381974Downstream
AEC-0002064ccmFCDScomplement23819712383914Overlaps Downstream
AEC-0002065ccmECDScomplement23839112384390Matches
AEC-0002066ccmDCDScomplement23843872384596Overlaps Upstream
AEC-0002067ccmCCDScomplement23845932385330Upstream
AEC-0002068ccmBCDScomplement23853722386034Upstream
AEC-0002069ccmACDScomplement23860312386654Upstream
AEC-0002070napCCDScomplement23866672387269Upstream
AEC-0002071napBCDScomplement23872792387728Upstream
AEC-0002072napHCDScomplement23877252388588Upstream
AEC-0002073napGCDScomplement23885752389270Upstream
AEC-0002074napACDScomplement23892772391763Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948