Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002066 (ccmD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002066 showshow history
Names
ccmD ECDH10B_2355
Product
cytochrome c biogenesis protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2384387 2384596 210 70
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007078 (IPR007078 Haem exporter protein D (CcmD)) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ccmD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007273
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2355 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cytochrome c biogenesis protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007078 Haem exporter protein D (CcmD) Protein Sequence Similarity - InterPro Domain: IPR007078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007273 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007273
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001338 ccmD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001955 ccmD CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001192 ccmD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003346 ccmD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005158 ccmD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002256 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009107 ccmD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005557 ccmD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007060 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006630 ccmD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005417 CcmD CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078872 ccmD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006483 ccmD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005820 ccmD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002488 ccmD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006932 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000561 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006672 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005198 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006640 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007716 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008175 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005757 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005960 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006895 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007244 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010251 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010122 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007417 ccmD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027173 ccmD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005034 ccmD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007009 ccmD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007273 ccmD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002264 ccmD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002507 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002345 ccmD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133096 ccmD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000194 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002483 ccmD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062144 ccmD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001001 ccmD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000490 ccmD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002121 ccmD CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002639 ccmD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004361 ccmD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002343 ccmD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006140 ccmD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006951 ccmD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000993 ccmD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073545 ccmD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088548 ccmD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002440 ccmD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002469 ccmD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001768 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003777 ccmD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000703 ccmD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001050 ccmD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001095 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240146 ccmD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004497 ccmD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002539 ccmD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008353 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000585 ccmD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124470 ccmD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004219 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005438 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006269 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005559 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031258 ccmD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007317 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002656 ccmD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002423 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005704 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005356 ccmD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002734 ccmD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003272 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001763 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2379387 to 2389596
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002061narPCDSforward23795102380157Downstream
AEC-0002062ccmHCDScomplement23803682381420Downstream
AEC-0002063ccmGCDScomplement23814172381974Downstream
AEC-0002064ccmFCDScomplement23819712383914Downstream
AEC-0002065ccmECDScomplement23839112384390Overlaps Downstream
AEC-0002066ccmDCDScomplement23843872384596Matches
AEC-0002067ccmCCDScomplement23845932385330Overlaps Upstream
AEC-0002068ccmBCDScomplement23853722386034Upstream
AEC-0002069ccmACDScomplement23860312386654Upstream
AEC-0002070napCCDScomplement23866672387269Upstream
AEC-0002071napBCDScomplement23872792387728Upstream
AEC-0002072napHCDScomplement23877252388588Upstream
AEC-0002073napGCDScomplement23885752389270Upstream
AEC-0002074napACDScomplement23892772391763Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948