Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002068 (ccmB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002068 showshow history
Names
ccmB ECDH10B_2357
Product
heme exporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2385372 2386034 663 221
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003544 (IPR003544 Cytochrome c-type biogenesis protein CcmB) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015886 heme transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015232 heme transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ccmB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007277
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2357 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product heme exporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003544 Cytochrome c-type biogenesis protein CcmB Protein Sequence Similarity - InterPro Domain: IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007277 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007277
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015886 heme transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015232 heme transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000177 ccmB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001535 ccmB CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001190 ccmB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003344 ccmB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005160 ccmB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002259 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009105 ccmB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002144 ccmB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007058 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006632 ccmB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005415 CcmB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078874 ccmB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006485 ccmB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005822 ccmB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002490 ccmB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006934 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000563 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006674 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005200 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006642 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007718 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008177 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005755 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005962 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006897 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007246 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010253 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010124 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007419 ccmB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027175 ccmB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005036 ccmB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007011 ccmB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007277 ccmB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002266 ccmB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002509 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002347 ccmB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133098 ccmB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000192 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002485 ccmB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062142 ccmB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001037 ccmB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000488 ccmB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002119 ccmB CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002641 ccmB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004359 ccmB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002341 ccmB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006138 ccmB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006949 ccmB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000991 ccmB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073547 ccmB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088550 ccmB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002442 ccmB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002471 ccmB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001770 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003770 ccmB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000705 ccmB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001052 ccmB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001093 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240155 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004499 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002541 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008355 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000583 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124455 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004217 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005436 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002331 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006267 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005561 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031256 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007315 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002658 ccmB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002425 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005702 ccmB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005354 ccmB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002736 ccmB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003274 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001761 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2380372 to 2391034
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002062ccmHCDScomplement23803682381420Downstream
AEC-0002063ccmGCDScomplement23814172381974Downstream
AEC-0002064ccmFCDScomplement23819712383914Downstream
AEC-0002065ccmECDScomplement23839112384390Downstream
AEC-0002066ccmDCDScomplement23843872384596Downstream
AEC-0002067ccmCCDScomplement23845932385330Downstream
AEC-0002068ccmBCDScomplement23853722386034Matches
AEC-0002069ccmACDScomplement23860312386654Overlaps Upstream
AEC-0002070napCCDScomplement23866672387269Upstream
AEC-0002071napBCDScomplement23872792387728Upstream
AEC-0002072napHCDScomplement23877252388588Upstream
AEC-0002073napGCDScomplement23885752389270Upstream
AEC-0002074napACDScomplement23892772391763Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948