Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002069 (ccmA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002069 showshow history
Names
ccmA ECDH10B_2358
Product
heme exporter subunit; ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2386031 2386654 624 208
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Automated Process Approved IPR005895 (IPR005895 ABC transporter, haem export, CcmA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ccmA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007279
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2358 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product heme exporter subunit; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005895 ABC transporter, haem export, CcmA Protein Sequence Similarity - InterPro Domain: IPR005895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007279 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007279
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0017004 cytochrome complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000113 ccmA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001398 ccmA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001189 ccmA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003343 ccmA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005161 ccmA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002260 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009104 ccmA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002145 ccmA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007057 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006633 ccmA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005414 CcmA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078875 ccmA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006486 ccmA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005823 ccmA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002491 ccmA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006935 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000564 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006675 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005201 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006643 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007719 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008178 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005754 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005963 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006898 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007247 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010254 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010125 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007420 ccmA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027176 ccmA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005037 ccmA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007012 ccmA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007279 ccmA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002267 ccmA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002510 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002348 ccmA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133099 ccmA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000191 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002486 ccmA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062141 ccmA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002804 ccmA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002813 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002118 ccmA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006558 ccmA CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002642 ccmA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006862 ccmA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006856 ccmA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006157 ccmA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006594 ccmA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004237 ccmA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005987 ccmA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006801 ccmA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007462 ccmA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000744 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007043 ccmA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005141 ccmA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007028 ccmA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004533 ccmA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006792 ccmA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002340 ccmA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006137 ccmA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006948 ccmA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000990 ccmA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073548 ccmA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088551 ccmA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002443 ccmA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002472 ccmA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001771 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003766 ccmA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000706 ccmA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001053 ccmA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001092 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240163 ccmA3 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004500 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002542 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008356 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000582 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124451 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004216 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005435 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002330 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006266 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005562 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031255 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007314 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002659 ccmA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002426 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005701 ccmA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005353 ccmA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002737 ccmA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003275 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001760 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2381031 to 2391654
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002062ccmHCDScomplement23803682381420Downstream
AEC-0002063ccmGCDScomplement23814172381974Downstream
AEC-0002064ccmFCDScomplement23819712383914Downstream
AEC-0002065ccmECDScomplement23839112384390Downstream
AEC-0002066ccmDCDScomplement23843872384596Downstream
AEC-0002067ccmCCDScomplement23845932385330Downstream
AEC-0002068ccmBCDScomplement23853722386034Overlaps Downstream
AEC-0002069ccmACDScomplement23860312386654Matches
AEC-0002070napCCDScomplement23866672387269Upstream
AEC-0002071napBCDScomplement23872792387728Upstream
AEC-0002072napHCDScomplement23877252388588Upstream
AEC-0002073napGCDScomplement23885752389270Upstream
AEC-0002074napACDScomplement23892772391763Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948