Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002083 (ompC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002083 showshow history
Names
ompC ECDH10B_2372
Product
outer membrane porin protein C
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2400656 2401759 1104 368
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001702 (IPR001702 Porin, Gram-negative type) Jul 2009
Automated Process Approved IPR001897 (IPR001897 Porin, gammaproteobacterial) Jul 2009
Automated Process Approved IPR013793 (IPR013793 Porin, Gram-negative type, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007321
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2372 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product outer membrane porin protein C Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001702 Porin, Gram-negative type Protein Sequence Similarity - InterPro Domain: IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013793 Porin, Gram-negative type, conserved site Protein Sequence Similarity - InterPro Domain: IPR013793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001897 Porin, gammaproteobacterial Protein Sequence Similarity - InterPro Domain: IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007321 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007321
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002070 ompC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002056 ompC CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001284 ompC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003327 ompC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005176 ompC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002276 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009089 ompC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002159 ompC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007037 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006649 ompC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005398 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078895 ompC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006502 ompC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005840 ompC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002506 ompC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006949 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000580 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006691 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005216 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006658 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007734 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008193 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005739 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005978 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006913 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007262 ompC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007435 ompC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027190 ompC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005052 ompC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007027 ompC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007321 ompC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002281 ompC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002524 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002363 ompC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133113 ompC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000175 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002504 ompC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006572 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000650 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002655 ompC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006875 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007245 ompC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006888 ompC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006264 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006869 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006171 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006607 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004250 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006000 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006814 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007449 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000598 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000597 ompC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000729 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007056 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005127 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006572 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005796 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110138 ompC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082310 ompC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097218 ompC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007014 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004520 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006806 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002326 ompC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006121 ompC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000973 ompC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073563 ompC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088564 ompC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002456 ompC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002486 ompC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003347 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004228 meoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000583 meoA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003226 ompC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003105 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236339 ompC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005555 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001141 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005319 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002153 ompC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119321 ompC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006075 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004716 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007732 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005266 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032712 ompC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005416 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003310 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002965 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006467 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006750 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001330 ompC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001599 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003370 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2395656 to 2406759
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002078mqoCDScomplement23941182395764Downstream
AEC-0002079yojICDScomplement23959822397625Downstream
AEC-0002080alkBCDScomplement23977012398351Downstream
AEC-0002081adaCDScomplement23983512399415Downstream
AEC-0002082yojLCDScomplement23994892400544Downstream
AEC-0002083ompCCDScomplement24006562401759Matches
AEC-0004265micFncRNAforward24020942402186Upstream
AEC-0002084rcsDCDSforward24024982405170Upstream
AEC-0002085rcsBCDSforward24051872405837Upstream
AEC-0002086rcsCCDScomplement24060372408886Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948