Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002089 (atoD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002089 showshow history
Names
atoD ECDH10B_2379
Product
acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2412457 2413119 663 221
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004165 (IPR004165 Coenzyme A transferase family I) Jul 2009
Automated Process Approved IPR012792 (IPR012792 3-oxoacid CoA-transferase, subunit A) Jul 2009
Automated Process Approved IPR004163 (IPR004163 Coenzyme A transferase binding site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008410 CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name atoD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007347
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2379 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012792 3-oxoacid CoA-transferase, subunit A Protein Sequence Similarity - InterPro Domain: IPR012792
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004163 Coenzyme A transferase binding site Protein Sequence Similarity - InterPro Domain: IPR004163
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004165 Coenzyme A transferase family I Protein Sequence Similarity - InterPro Domain: IPR004165
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007347 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007347
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008410 CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003857 atoD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003442 atoD CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003319 pcaI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005184 pcaI CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009079 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002171 atoD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007029 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078901 atoD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002513 atoD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005059 atoD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007036 pcaI CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007347 atoD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002292 atoD CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002369 pcaI CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002510 atoD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061530 atoD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000720 atoD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001144 atoD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005881 pcaI CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002494 atoD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003380 atoD_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003800 atoD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2407457 to 2418119
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002086rcsCCDScomplement24060372408886Upstream
AEC-0002087atoSCDSforward24090532410879Upstream
AEC-0002088atoCCDSforward24108762412261Upstream
AEC-0002089atoDCDSforward24124572413119Matches
AEC-0002090atoACDSforward24131192413769Overlaps Downstream
AEC-0002091atoECDSforward24137662415088Downstream
AEC-0002092atoBCDSforward24151192416303Downstream
AEC-0002093yfaPCDScomplement24163772417153Downstream
AEC-0002094yfaQCDScomplement24171582418807Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948