Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002091 (atoE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002091 showshow history
Names
atoE ECDH10B_2381
Product
short chain fatty acid transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2413766 2415088 1323 441
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006161 (IPR006161 Conserved hypothetical protein CHP00336) Jul 2009
Automated Process Approved IPR006160 (IPR006160 Short chain fatty acid transporter AtoE) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015912 short-chain fatty acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006161
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006161
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015635 (DEPRECATED) short-chain fatty acid transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006161
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name atoE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007353
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2381 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product short chain fatty acid transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006161 Conserved hypothetical protein CHP00336 Protein Sequence Similarity - InterPro Domain: IPR006161
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006160 Short chain fatty acid transporter AtoE Protein Sequence Similarity - InterPro Domain: IPR006160
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007353 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007353
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015912 short-chain fatty acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006161
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006161
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015635 (DEPRECATED) short-chain fatty acid transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006161
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005058 atoE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005272 atoE CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003317 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005186 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002285 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009077 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002173 atoE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007026 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078903 atoE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002515 atoE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005061 atoE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007038 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007353 atoE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002294 atoE CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002371 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002512 atoE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005883 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002496 atoE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003382 atoE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003798 atoE CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2408766 to 2420088
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002086rcsCCDScomplement24060372408886Upstream
AEC-0002087atoSCDSforward24090532410879Upstream
AEC-0002088atoCCDSforward24108762412261Upstream
AEC-0002089atoDCDSforward24124572413119Upstream
AEC-0002090atoACDSforward24131192413769Overlaps Upstream
AEC-0002091atoECDSforward24137662415088Matches
AEC-0002092atoBCDSforward24151192416303Downstream
AEC-0002093yfaPCDScomplement24163772417153Downstream
AEC-0002094yfaQCDScomplement24171582418807Downstream
AEC-0002095yfaS_2CDSpcomplement24188082419293Downstream
AEC-0004549yfaSpseudogenecomplement24188082423412Downstream
AEC-0002096yfaS_1CDSpcomplement24193092423412Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948