Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002100 (ubiG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002100 showshow history
Names
ubiG ECDH10B_2391
Product
bifunctional 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2428577 2429299 723 241
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010233 (IPR010233 Ubiquinone biosynthesis O-methyltransferase) Jul 2009
Automated Process Approved IPR013216 (IPR013216 Methyltransferase type 11) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013216
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013216
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ubiG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007374
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2391 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bifunctional 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010233 Ubiquinone biosynthesis O-methyltransferase Protein Sequence Similarity - InterPro Domain: IPR010233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013216 Methyltransferase type 11 Protein Sequence Similarity - InterPro Domain: IPR013216
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007374 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007374
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013216
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013216
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000496 ubiG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000380 ubiG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017292 ubiG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001277 ubiG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003307 ubiG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005195 ubiG CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002293 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008991 ubiG CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002182 ubiG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007013 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006662 ubiG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006702 ubiG pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078911 ubiG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006513 ubiG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005851 ubiG CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002523 ubiG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006962 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000593 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006703 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005229 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006671 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007747 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008206 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005726 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005991 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006925 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007275 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006922 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006152 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007448 ubiG CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027202 ubiG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007046 ubiG CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007374 ubiG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002304 ubiG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002534 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002382 ubiG CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133125 ubiG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000163 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002520 ubiG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061446 ubiG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004078 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003637 ubiG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001097 ubiG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006581 ubiG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000644 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002668 ubiG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006884 ubiG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007284 ubiG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006921 ubiG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006254 ubiG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006878 ubiG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006180 ubiG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006616 ubiG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004259 ubiG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006009 ubiG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006823 ubiG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007440 ubiG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000589 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000588 ubiG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000716 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007065 ubiG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005118 ubiG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006582 ubiG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006556 ubiG CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110166 ubiG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082300 ubiG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097260 ubiG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007005 ubiG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004509 ubiG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006817 ubiG CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002287 ubiG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008018 ubiG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005893 ubiG CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002790 ubiG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073580 ubiG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088576 ubiG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002470 ubiG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002505 ubiG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003416 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004195 pufX CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000589 pufX_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003232 ubiG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003367 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236361 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005420 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001131 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005311 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002158 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119290 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006067 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004724 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007724 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005275 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032719 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005426 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003321 ubiG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002976 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006475 ubiG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006758 ubiG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001323 ubiG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001589 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003381 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2423577 to 2434299
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002097yfaTCDScomplement24233462423969Upstream
AEC-0002098yfaACDScomplement24239662425654Upstream
AEC-0002099gyrACDScomplement24258032428430Upstream
AEC-0002100ubiGCDSforward24285772429299Matches
AEC-0002101yfaLCDScomplement24294272433179Downstream
AEC-0002102nrdACDSforward24338752436160Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948