Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002102 (nrdA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002102 showshow history
Names
nrdA ECDH10B_2393
Product
ribonucleoside diphosphate reductase 1, alpha subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2433875 2436160 2286 762
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005144 (IPR005144 ATP-cone domain) Jul 2009
Automated Process Approved IPR008926 (IPR008926 Ribonucleotide reductase R1 subunit, N-terminal) Jul 2009
Automated Process Approved IPR000788 (IPR000788 Ribonucleotide reductase large subunit, C-terminal) Jul 2009
Automated Process Approved IPR013346 (IPR013346 Ribonucleotide reductase, class I , alpha subunit) Jul 2009
Automated Process Approved IPR013509 (IPR013509 Ribonucleotide reductase large subunit, N-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrdA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007383
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2393 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribonucleoside diphosphate reductase 1, alpha subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005144 ATP-cone domain Protein Sequence Similarity - InterPro Domain: IPR005144
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008926 Ribonucleotide reductase R1 subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013346 Ribonucleotide reductase, class I , alpha subunit Protein Sequence Similarity - InterPro Domain: IPR013346
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013509 Ribonucleotide reductase large subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000788 Ribonucleotide reductase large subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000788
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007383 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007383
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005971 ribonucleoside-diphosphate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000117 nrdA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000128 nrdA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020799 nrdA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001276 nrdA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003303 nrdA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005197 nrdA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002295 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008989 nrdA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002184 nrdA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007011 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006665 nrdA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006700 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078913 nrdA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006516 nrdA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005853 nrdA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002525 nrdA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006966 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000595 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006706 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005231 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006673 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007749 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008208 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005724 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005993 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006927 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007277 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006920 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006154 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007450 nrdA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027204 nrdA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005072 nrdA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007048 nrdA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007383 nrdA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002306 nrdA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002536 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002384 nrdA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133127 nrdA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000161 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002522 nrdA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061445 nrdA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000663 nrdA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001535 nrdA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001095 nrdA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006582 nrdA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000643 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002669 nrdA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006885 nrdA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007286 nrdA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006923 nrdA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006253 nrdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006879 nrdA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006181 nrdA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006617 nrdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004260 nrdA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006010 nrdA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006824 nrdA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007439 nrdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000588 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000587 nrdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000714 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007066 nrdA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005117 nrdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006583 nrdA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006557 nrdA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082299 nrdA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097268 nrdA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007004 nrdA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004508 nrdA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006818 nrdA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002282 nrdA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008023 nrdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005896 nrdA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002794 nrdA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073586 nrdA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088579 nrdA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002475 nrdA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002509 nrdA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003417 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004189 dnaF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000590 nrdA_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003233 nrdA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003368 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001130 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005310 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002159 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119287 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006066 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004725 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007722 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005276 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032720 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005427 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003322 nrdA CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006476 nrdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006759 nrdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001322 nrdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001588 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003382 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2428875 to 2441160
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002100ubiGCDSforward24285772429299Upstream
AEC-0002101yfaLCDScomplement24294272433179Upstream
AEC-0002102nrdACDSforward24338752436160Matches
AEC-0002103nrdBCDSforward24363942437524Downstream
AEC-0002104yfaECDSforward24375242437778Downstream
AEC-0002105inaACDScomplement24378322438482Downstream
AEC-0002106yfaHCDSforward24386972438903Downstream
AEC-0002107glpQCDScomplement24389452440021Downstream
AEC-0002108glpTCDScomplement24400262441384Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948