Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002103 (nrdB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002103 showshow history
Names
nrdB ECDH10B_2394
Product
ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2436394 2437524 1131 377
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009078 (IPR009078 Ferritin-like superfamily) Jul 2009
Automated Process Approved IPR012348 (IPR012348 Ribonucleotide reductase-like) Jul 2009
Automated Process Approved IPR000358 (IPR000358 Ribonucleotide reductase small subunit family) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009186 deoxyribonucleoside diphosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nrdB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007386
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2394 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009078 Ferritin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000358 Ribonucleotide reductase small subunit family Protein Sequence Similarity - InterPro Domain: IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012348 Ribonucleotide reductase-like Protein Sequence Similarity - InterPro Domain: IPR012348
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007386 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007386
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009186 deoxyribonucleoside diphosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000358
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000327 nrdB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000240 nrdB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020798 nrdB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001275 nrdB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003302 nrdB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005198 nrdB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002296 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008988 nrdB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002185 nrdB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007010 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006666 nrdB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006699 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078914 nrdB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006517 nrdB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005854 nrdB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002526 nrdB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006967 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000596 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006707 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005232 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006674 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007750 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008209 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005723 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0005994 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006928 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007278 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006919 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006155 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007451 nrdB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027205 nrdB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005073 nrdB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007049 nrdB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007386 nrdB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002307 nrdB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002537 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002385 nrdB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133128 nrdB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000160 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002523 nrdB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061444 nrdB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000658 nrdB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001534 nrdB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001094 nrdB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006583 nrdB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000642 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002671 nrdB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006886 nrdB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007292 nrdB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006928 nrdB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006252 nrdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006880 nrdB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006182 nrdB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006618 nrdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004261 nrdB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006011 nrdB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006825 nrdB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007438 nrdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000587 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000586 nrdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000713 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007067 nrdB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005116 nrdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006584 nrdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006558 nrdB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110172 nrdB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082298 nrdB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097271 nrdB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007003 nrdB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004507 nrdB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006819 nrdB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002281 nrdB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008024 nrdB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005897 nrdB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002795 nrdB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073588 nrdB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088580 nrdB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002476 nrdB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002510 nrdB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003418 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004186 ftsB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000591 nrdB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003234 nrdB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003369 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236363 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005423 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001129 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005309 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002160 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119284 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006065 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004726 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003749 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007721 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005277 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032721 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005428 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003323 nrdB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002978 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006477 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006760 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001321 nrdB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001587 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003383 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2431394 to 2442524
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002101yfaLCDScomplement24294272433179Upstream
AEC-0002102nrdACDSforward24338752436160Upstream
AEC-0002103nrdBCDSforward24363942437524Matches
AEC-0002104yfaECDSforward24375242437778Overlaps Downstream
AEC-0002105inaACDScomplement24378322438482Downstream
AEC-0002106yfaHCDSforward24386972438903Downstream
AEC-0002107glpQCDScomplement24389452440021Downstream
AEC-0002108glpTCDScomplement24400262441384Downstream
AEC-0002109glpACDSforward24416572443285Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948