Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002107 (glpQ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002107 showshow history
Names
glpQ ECDH10B_2398
Product
periplasmic glycerophosphodiester phosphodiesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2438945 2440021 1077 359
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004129 (IPR004129 (DEPRECATED) Glycerophosphoryl diester phosphodiesterase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008889 glycerophosphodiester phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpQ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007399
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2398 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product periplasmic glycerophosphodiester phosphodiesterase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004129 (DEPRECATED) Glycerophosphoryl diester phosphodiesterase Protein Sequence Similarity - InterPro Domain: IPR004129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007399 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007399
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008889 glycerophosphodiester phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002050 glpQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002142 glpQ CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015029 glpQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003300 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005202 glpQ CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002299 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008984 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002188 glpQ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007005 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006670 glpQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006695 GlpQ CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078917 glpQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006521 glpQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005858 glpQ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002529 glpQ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006971 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000603 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006714 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005239 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006681 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007757 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008216 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005716 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006001 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007284 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006913 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006162 glpQ CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027213 glpQ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005076 glpQ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007053 glpQ CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007399 glpQ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002311 glpQ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002541 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002390 glpQ CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133134 glpQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000153 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002526 glpQ CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064493 glpQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002460 glpQ CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004305 glpQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006587 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000638 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002675 glpQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006890 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007305 glpQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006941 glpQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006248 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006884 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006186 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006622 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004265 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006015 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006829 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007434 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000583 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000582 glpQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000709 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007071 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005112 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006588 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006563 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110183 glpQ CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082294 glpQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097280 glpQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006999 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004503 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006823 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002277 glpQ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008030 glpQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005901 glpQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002800 glpQ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073593 glpQ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088584 glpQ CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002479 glpQ CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002519 glpQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001854 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000652 glpQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002526 glpQ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001689 glpQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003177 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241991 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004669 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000247 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007619 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128184 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008113 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006501 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001033 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008497 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007491 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030009 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006947 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000177 glpQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004128 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008127 glpQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004159 glpQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000226 glpQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000264 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004738 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2433945 to 2445021
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002102nrdACDSforward24338752436160Downstream
AEC-0002103nrdBCDSforward24363942437524Downstream
AEC-0002104yfaECDSforward24375242437778Downstream
AEC-0002105inaACDScomplement24378322438482Downstream
AEC-0002106yfaHCDSforward24386972438903Downstream
AEC-0002107glpQCDScomplement24389452440021Matches
AEC-0002108glpTCDScomplement24400262441384Upstream
AEC-0002109glpACDSforward24416572443285Upstream
AEC-0002110glpBCDSforward24432752444534Upstream
AEC-0002111glpCCDSforward24445312445721Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948