Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002108 (glpT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002108 showshow history
Names
glpT ECDH10B_2399
Product
sn-glycerol-3-phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2440026 2441384 1359 453
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR005267 (IPR005267 Glycerol-3-phosphate transporter) Jul 2009
Automated Process Approved IPR000849 (IPR000849 Sugar phosphate transporter) Jul 2009
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0015794 glycerol-3-phosphate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015169 glycerol-3-phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007401
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2399 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product sn-glycerol-3-phosphate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005267 Glycerol-3-phosphate transporter Protein Sequence Similarity - InterPro Domain: IPR005267
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000849 Sugar phosphate transporter Protein Sequence Similarity - InterPro Domain: IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007401 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007401
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015794 glycerol-3-phosphate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015169 glycerol-3-phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005267
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002159 glpT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001912 glpT CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015031 glpT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000253 glpT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003299 glpT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005203 glpT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002300 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008983 glpT CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002189 glpT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007004 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006671 glpT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006694 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078918 glpT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006522 glpT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005859 glpT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002530 glpT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006972 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000604 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006715 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005240 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006682 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007758 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008217 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005715 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006002 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007285 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006912 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006163 glpT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007460 glpT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027214 glpT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005077 glpT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007054 glpT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007401 glpT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002312 glpT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002542 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002391 glpT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133135 glpT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000152 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002527 glpT CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064492 glpT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002459 glpT CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002242 glpT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002541 glpT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006588 glpT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000637 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002676 glpT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006891 glpT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007310 glpT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006946 glpT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006247 glpT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006885 glpT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006187 glpT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006623 glpT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004266 glpT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006016 glpT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006830 glpT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007433 glpT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000582 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000581 glpT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000708 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007072 glpT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005111 glpT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006589 glpT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006564 glpT CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110185 glpT CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082293 glpT CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097282 glpT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006998 glpT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004502 glpT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006824 glpT CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002276 glpT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008031 glpT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005902 glpT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002801 glpT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073594 glpT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088585 glpT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002480 glpT CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002520 glpT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001855 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000654 glpT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002527 glpT_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001688 glpT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003178 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004160 glpT CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2435026 to 2446384
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002102nrdACDSforward24338752436160Downstream
AEC-0002103nrdBCDSforward24363942437524Downstream
AEC-0002104yfaECDSforward24375242437778Downstream
AEC-0002105inaACDScomplement24378322438482Downstream
AEC-0002106yfaHCDSforward24386972438903Downstream
AEC-0002107glpQCDScomplement24389452440021Downstream
AEC-0002108glpTCDScomplement24400262441384Matches
AEC-0002109glpACDSforward24416572443285Upstream
AEC-0002110glpBCDSforward24432752444534Upstream
AEC-0002111glpCCDSforward24445312445721Upstream
AEC-0002112yfaDCDSforward24459142446813Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948