Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002109 (glpA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002109 showshow history
Names
glpA ECDH10B_2400
Product
sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2441657 2443285 1629 543
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000447 (IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase) Jul 2009
Automated Process Approved IPR017752 (IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit) Jul 2009
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Jul 2009
Automated Process Approved IPR007419 (IPR007419 BFD-like [2Fe-2S]-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0046174 polyol catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006072 glycerol-3-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009331 glycerol-3-phosphate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007422
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2400 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit Protein Sequence Similarity - InterPro Domain: IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007419 BFD-like [2Fe-2S]-binding domain Protein Sequence Similarity - InterPro Domain: IPR007419
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007422 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007422
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0046174 polyol catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006072 glycerol-3-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009331 glycerol-3-phosphate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002049 glpA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002167 glpA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015033 glpA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003297 glpA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005205 glpA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002301 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008982 glpA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002190 glpA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007003 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006672 glpA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006692 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078919 glpA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006523 glpA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005861 glpA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002531 glpA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006974 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000605 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006716 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005241 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006683 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007759 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008218 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005714 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006003 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006936 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007286 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006911 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006164 glpA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007461 glpA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027215 glpA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005078 glpA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007056 glpA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007422 glpA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002313 glpA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002544 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002392 glpA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133136 glpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000151 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002528 glpA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064491 glpA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002454 glpA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003218 glpA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002540 glpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006589 glpA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000636 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002677 glpA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006892 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007314 glpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006950 glpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006246 glpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006886 glpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006188 glpA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006624 glpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004267 glpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006017 glpA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006831 glpA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007432 glpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000581 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000580 glpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000706 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007073 glpA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005110 glpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006590 glpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006565 glpA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110190 glpA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082292 glpA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097304 glpA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006997 glpA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004501 glpA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006825 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002275 glpA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008032 glpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005903 glpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002802 glpA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073595 glpA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088586 glpA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002481 glpA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002521 glpA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001856 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000658 glpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002528 glpA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001686 glpA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003179 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241992 glpA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000249 glpA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007618 glpA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003551 glpA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128180 glpA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008114 glpA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006502 glpA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008498 glpA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007492 glpA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030010 glpA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006948 glpA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000179 glpA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004127 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008125 glpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004162 glpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000227 glpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000266 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004737 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2436657 to 2448285
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002103nrdBCDSforward24363942437524Upstream
AEC-0002104yfaECDSforward24375242437778Upstream
AEC-0002105inaACDScomplement24378322438482Upstream
AEC-0002106yfaHCDSforward24386972438903Upstream
AEC-0002107glpQCDScomplement24389452440021Upstream
AEC-0002108glpTCDScomplement24400262441384Upstream
AEC-0002109glpACDSforward24416572443285Matches
AEC-0002110glpBCDSforward24432752444534Overlaps Downstream
AEC-0002111glpCCDSforward24445312445721Downstream
AEC-0002112yfaDCDSforward24459142446813Downstream
AEC-0004084ypaApseudogeneforward24468262447011Downstream
AEC-0002113yfaUCDScomplement24470522447855Downstream
AEC-0002114yfaVCDScomplement24478732449162Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948