Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002110 (glpB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002110 showshow history
Names
glpB ECDH10B_2401
Product
sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2443275 2444534 1260 420
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009158 (IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit) Jul 2009
Automated Process Approved IPR003953 (IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009158
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007424
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2401 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit Protein Sequence Similarity - InterPro Domain: IPR009158
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Protein Sequence Similarity - InterPro Domain: IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007424 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007424
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009158
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002028 glpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002150 glpB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015034 glpB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003296 glpB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005206 glpB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002302 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008981 glpB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002191 glpB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007002 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006673 glpB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006691 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078920 glpB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006524 glpB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005862 glpB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002532 glpB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006975 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000606 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006717 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005242 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006684 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007760 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008219 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005713 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006004 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006937 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007287 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006910 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006165 glpB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007462 glpB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027216 glpB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005079 glpB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007057 glpB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007424 glpB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002314 glpB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002545 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002393 glpB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133137 glpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000150 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002529 glpB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064490 glpB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002458 glpB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001119 glpB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002539 glpB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006590 glpB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000635 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002678 glpB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006893 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007319 glpB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006955 glpB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006245 glpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006887 glpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006189 glpB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006625 glpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004268 glpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006018 glpB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006832 glpB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007431 glpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000580 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000579 glpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000705 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007074 glpB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005109 glpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006591 glpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006566 glpB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110195 glpB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082291 glpB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097307 glpB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006996 glpB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004500 glpB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006826 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002274 glpB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008033 glpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005904 glpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002803 glpB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073596 glpB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088587 glpB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002482 glpB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002522 glpB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001857 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000662 glpB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002529 glpB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001685 glpB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003180 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241994 glpB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004671 glpB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000250 glpB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007617 glpB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003552 glpB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128178 glpB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008115 glpB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006503 glpB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001065 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008499 glpB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007493 glpB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030011 glpB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006949 glpB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000180 glpB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004125 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008124 glpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004163 glpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000228 glpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000267 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004735 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2438275 to 2449534
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002105inaACDScomplement24378322438482Upstream
AEC-0002106yfaHCDSforward24386972438903Upstream
AEC-0002107glpQCDScomplement24389452440021Upstream
AEC-0002108glpTCDScomplement24400262441384Upstream
AEC-0002109glpACDSforward24416572443285Overlaps Upstream
AEC-0002110glpBCDSforward24432752444534Matches
AEC-0002111glpCCDSforward24445312445721Overlaps Downstream
AEC-0002112yfaDCDSforward24459142446813Downstream
AEC-0004084ypaApseudogeneforward24468262447011Downstream
AEC-0002113yfaUCDScomplement24470522447855Downstream
AEC-0002114yfaVCDScomplement24478732449162Downstream
AEC-0002115yfaWCDScomplement24492192450424Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948