Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002111 (glpC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002111 showshow history
Names
glpC ECDH10B_2402
Product
sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2444531 2445721 1191 397
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009051 (IPR009051 Alpha-helical ferredoxin) Jul 2009
Automated Process Approved IPR012285 (IPR012285 (DEPRECATED) Fumarate reductase, C-terminal) Jul 2009
Automated Process Approved IPR017753 (IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit) Jul 2009
Automated Process Approved IPR004017 (IPR004017 Cysteine-rich domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009051
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009051
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007426
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_2402 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR009051 Alpha-helical ferredoxin Protein Sequence Similarity - InterPro Domain: IPR009051
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit Protein Sequence Similarity - InterPro Domain: IPR017753
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR012285 (DEPRECATED) Fumarate reductase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012285
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR004017 Cysteine-rich domain Protein Sequence Similarity - InterPro Domain: IPR004017
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007426 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007426
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009051
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009051
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002084 glpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002160 glpC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015037 glpC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003295 glpC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005207 glpC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002303 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008980 glpC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002192 glpC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007001 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006674 glpC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006690 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078921 glpC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006525 glpC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005863 glpC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002533 glpC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006976 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000607 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006718 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005243 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006685 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007761 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008220 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005712 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006005 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006938 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007288 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006909 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006166 glpC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007463 glpC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027217 glpC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005080 glpC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007058 glpC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007426 glpC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002315 glpC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002546 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002394 glpC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133138 glpC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000149 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002530 glpC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064489 glpC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003555 glpC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003220 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002538 glpC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006591 glpC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000634 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002679 glpC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006894 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007321 glpC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006957 glpC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006244 glpC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006888 glpC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006190 glpC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006626 glpC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004269 glpC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006019 glpC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006833 glpC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007430 glpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000579 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000578 glpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000704 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007075 glpC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005108 glpC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006592 glpC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006567 glpC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110197 glpC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082290 glpC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097310 glpC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006995 glpC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004499 glpC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006827 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002273 glpC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008034 glpC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005905 glpC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002804 glpC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073597 glpC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088588 glpC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002483 glpC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002523 glpC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001858 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000664 glpC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002530 glpC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001684 glpC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003181 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241995 glpC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004672 glpC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000252 glpC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007616 glpC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003553 glpC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128174 glpC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008116 glpC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006504 glpC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001066 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008500 glpC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007494 glpC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030012 glpC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006950 glpC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000182 glpC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004124 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008123 glpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004164 glpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000229 glpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000269 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004734 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2439531 to 2450721
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002107glpQCDScomplement24389452440021Upstream
AEC-0002108glpTCDScomplement24400262441384Upstream
AEC-0002109glpACDSforward24416572443285Upstream
AEC-0002110glpBCDSforward24432752444534Overlaps Upstream
AEC-0002111glpCCDSforward24445312445721Matches
AEC-0002112yfaDCDSforward24459142446813Downstream
AEC-0004084ypaApseudogeneforward24468262447011Downstream
AEC-0002113yfaUCDScomplement24470522447855Downstream
AEC-0002114yfaVCDScomplement24478732449162Downstream
AEC-0002115yfaWCDScomplement24492192450424Downstream
AEC-0002116yfaXCDScomplement24504392451221Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948