Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002119 (yfaO) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002119 showshow history
Names
yfaO ECDH10B_2411
Product
predicted NUDIX hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2453564 2453989 426 142
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000086 (IPR000086 NUDIX hydrolase domain) Jul 2009
Automated Process Approved IPR015797 (IPR015797 NUDIX hydrolase-like domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfaO Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007449
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2411 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted NUDIX hydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015797 NUDIX hydrolase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015797
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000086 NUDIX hydrolase domain Protein Sequence Similarity - InterPro Domain: IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007449 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007449
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002968 nudI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003083 nudI CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003286 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005216 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002312 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008970 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002200 yfaO CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006990 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006679 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006685 YfaO CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078930 nudI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006530 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005868 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002542 nudI CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006981 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000619 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006730 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005255 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006697 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007773 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008232 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005700 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006017 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006950 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007300 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006897 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006178 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007472 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027225 yfaO CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005090 nudI CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007069 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007449 nudI CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002324 yfaO CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002551 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002404 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133150 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000136 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002540 yfaO CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006600 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000630 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002689 yfaO CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006903 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007344 yfaO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006982 yfaO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006235 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006897 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006199 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006630 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004278 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006842 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007421 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000569 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000568 yfaO CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000693 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007084 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005098 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006601 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006576 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110218 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082280 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097333 yfaO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006986 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004495 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006836 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005914 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073602 yfaO CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088592 yfaO CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002489 yfaO CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002531 yfaO CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2448564 to 2458989
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002114yfaVCDScomplement24478732449162Upstream
AEC-0002115yfaWCDScomplement24492192450424Upstream
AEC-0002116yfaXCDScomplement24504392451221Upstream
AEC-0002117yfaYCDScomplement24514412452643Upstream
AEC-0002118yfaZCDScomplement24527432453285Upstream
AEC-0002119yfaOCDSforward24535642453989Matches
AEC-0002120aisCDScomplement24540282454630Downstream
AEC-0002121arnBCDSforward24549382456077Downstream
AEC-0002122arnCCDSforward24560812457049Downstream
AEC-0002123arnACDSforward24570492459031Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948