Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002122 (arnC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002122 showshow history
Names
arnC ECDH10B_2414
Product
Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2456081 2457049 969 323
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001173 (IPR001173 Glycosyltransferase 2-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name arnC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007458
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2414 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase Published Annotation - PubMed ID: 11535604
Reference: Escherichia coli K-12 W3110 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001173 Glycosyltransferase 2-like Protein Sequence Similarity - InterPro Domain: IPR001173
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007458 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007458
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001808 arnC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001746 arnC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016247 arnC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002463 arnC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003281 arnC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005219 arnC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002315 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008967 arnC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002203 yfbF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006986 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006682 arnC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006682 arnC pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078933 arnC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006533 arnC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005871 arnC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002545 arnC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006984 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000622 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006733 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005258 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006700 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007776 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008235 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005697 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006020 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006953 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007303 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006894 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006181 arnC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007475 arnC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027228 arnC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005093 arnC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007072 arnC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007458 arnC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002327 arnC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002554 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002407 arnC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133153 arnC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000133 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002543 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063434 arnC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002698 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001969 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000410 arnC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006603 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002692 arnC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006906 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007353 pmrF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0006991 pmrF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006231 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006900 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006202 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006634 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004281 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006035 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006845 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007418 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000566 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000565 arnC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000689 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007087 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005095 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006604 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006579 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110225 arnC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082277 arnC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097342 arnC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006983 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004492 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006839 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002536 arnC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005917 arnC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002819 arnC pseudogene
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073605 arnC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088595 arnC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002492 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002534 arnC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000579 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006438 pmrF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000873 pmrF_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000205 arnC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001499 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239569 arnC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006726 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002135 arnC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004911 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001043 arnC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123336 arnC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008304 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007778 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003203 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008894 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006162 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031615 arnC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008029 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002260 arnC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000863 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006947 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002416 arnC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002866 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002156 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2451081 to 2462049
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002116yfaXCDScomplement24504392451221Upstream
AEC-0002117yfaYCDScomplement24514412452643Upstream
AEC-0002118yfaZCDScomplement24527432453285Upstream
AEC-0002119yfaOCDSforward24535642453989Upstream
AEC-0002120aisCDScomplement24540282454630Upstream
AEC-0002121arnBCDSforward24549382456077Upstream
AEC-0002122arnCCDSforward24560812457049Matches
AEC-0002123arnACDSforward24570492459031Overlaps Downstream
AEC-0002124yfbHCDSforward24590282459918Downstream
AEC-0002125arnTCDSforward24599182461570Downstream
AEC-0004085yfbWCDSforward24615672461902Downstream
AEC-0002126yfbJCDSforward24619022462288Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948