Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002133 (menF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002133 showshow history
Names
menF ECDH10B_2426
Product
isochorismate synthase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2468358 2469653 1296 432
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005801 (IPR005801 ADC synthase) Jul 2009
Automated Process Approved IPR015890 (IPR015890 Chorismate-utilising enzyme, C-terminal) Jul 2009
Automated Process Approved IPR004561 (IPR004561 Isochorismate synthase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005801
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008909 isochorismate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004561
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name menF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007485
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2426 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product isochorismate synthase 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015890 Chorismate-utilising enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015890
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004561 Isochorismate synthase Protein Sequence Similarity - InterPro Domain: IPR004561
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005801 ADC synthase Protein Sequence Similarity - InterPro Domain: IPR005801
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007485 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007485
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005801
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008909 isochorismate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004561
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001926 menF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001873 menF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017302 menF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003269 menF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005231 menF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002327 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008954 menF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002214 menF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006973 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006694 menF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006670 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078946 menF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006545 menF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005883 menF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002557 menF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006996 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000636 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006745 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005270 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006712 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006297 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008247 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005685 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006032 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006965 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007315 menF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006882 menF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006193 menF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007487 menF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027241 menF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005105 menF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007084 menF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007485 menF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002339 menF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002566 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002419 menF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133164 menF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000119 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002556 menF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061456 menF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000678 menF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000303 menF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001105 menF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006615 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000617 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002704 menF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006918 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007385 menF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007022 menF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006219 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006912 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006214 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006646 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004293 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006047 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006857 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007406 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000554 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000553 menF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000677 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007099 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005083 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006616 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006591 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110246 menF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082265 menF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097375 menF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006971 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004479 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006852 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002547 menF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008053 menF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005929 menF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002830 menF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073618 menF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088606 menF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002504 menF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002545 menF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002173 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004127 menF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000604 menF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003545 menF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002549 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239878 menF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005900 menF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002440 menF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007900 menF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000938 menF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123705 menF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004672 menF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005571 menF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003015 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006890 menF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005463 menF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031348 menF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008236 menF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002558 menF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002325 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005798 menF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005447 menF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002649 menF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003169 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001865 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2463358 to 2474653
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002128menECDScomplement24626582464013Downstream
AEC-0002129menCCDScomplement24640102464972Downstream
AEC-0002130menBCDScomplement24649722465829Downstream
AEC-0002131yfbBCDScomplement24658442466602Downstream
AEC-0002132menDCDScomplement24665992468269Downstream
AEC-0002133menFCDScomplement24683582469653Matches
AEC-0002134elaBCDScomplement24697322470037Upstream
AEC-0002135elaACDScomplement24700922470553Upstream
AEC-0004524rbnpseudogeneforward24706182471525(Interval #1) Upstream
AEC-0000038IS1A.3repeat_regionforward24715262472293Upstream
AEC-0004524rbnpseudogeneforward24723032472312(Interval #2) Upstream
AEC-0002136elaDCDSforward24725002473711Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948