Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002150 (nuoF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002150 showshow history
Names
nuoF ECDH10B_2446
Product
NADH:ubiquinone oxidoreductase, chain F
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2490005 2491342 1338 446
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001949 (IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site) Jul 2009
Automated Process Approved IPR011538 (IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain) Jul 2009
Automated Process Approved IPR011537 (IPR011537 NADH ubiquinone oxidoreductase, F subunit) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nuoF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007545
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2446 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product NADH:ubiquinone oxidoreductase, chain F Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site Protein Sequence Similarity - InterPro Domain: IPR001949
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011537 NADH ubiquinone oxidoreductase, F subunit Protein Sequence Similarity - InterPro Domain: IPR011537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Protein Sequence Similarity - InterPro Domain: IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0007545 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0007545
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016651 oxidoreductase activity, acting on NAD(P)H GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011538
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000396 nuoF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000406 nuoF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017325 nuoF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001260 nuoF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003251 nuoF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005248 nuoF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002341 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008938 nuoF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002229 nuoF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006957 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006710 nuoF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006653 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078962 nuoF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006561 nuoF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005900 nuoF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002571 nuoF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007011 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000651 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006761 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005286 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006728 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006313 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008263 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005669 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006049 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006981 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007331 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006866 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006209 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007503 nuoF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027257 nuoF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005119 nuoF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007106 nuoF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0007545 nuoF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002358 nuoF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002582 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002437 nuoF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133179 nuoF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000104 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002571 nuoF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063309 nuoF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001733 nuoF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002944 nuoF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000266 nuoF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006632 nuoF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000603 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002718 nuoF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006934 nuoF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007441 nuoF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007073 nuoF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006205 nuoF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006925 nuoF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006227 nuoF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006659 nuoF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004310 nuoF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006066 nuoF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006870 nuoF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007390 nuoF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000541 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000540 nuoF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000660 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007115 nuoF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005067 nuoF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006629 nuoF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006604 nuoF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110289 nuoF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082252 nuoF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097417 nuoF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006958 nuoF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004463 nuoF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008720 nuoF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002563 nuoF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008069 nuoF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005952 nuoF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002852 nuoF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073637 nuoF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088621 nuoF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002520 nuoF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002562 nuoF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002152 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004041 nuoF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000624 nuoF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003769 nuoF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002528 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239976 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005926 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002466 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007927 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000916 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123827 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004700 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005598 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006918 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005491 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031323 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008209 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002584 nuoF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002351 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005774 nuoF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005424 nuoF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002671 nuoF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003195 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001839 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2485005 to 2496342
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002145nuoKCDScomplement24848302485132Downstream
AEC-0002146nuoJCDScomplement24851292485683Downstream
AEC-0002147nuoICDScomplement24856952486237Downstream
AEC-0002148nuoHCDScomplement24862522487229Downstream
AEC-0002149nuoGCDScomplement24872262489958Downstream
AEC-0002150nuoFCDScomplement24900052491342Matches
AEC-0002151nuoECDScomplement24913392491839Overlaps Upstream
AEC-0002152nuoCCDScomplement24918422493644Upstream
AEC-0002153nuoBCDScomplement24937382494400Upstream
AEC-0002154nuoACDScomplement24944162494859Upstream
AEC-0002155lrhACDScomplement24954902496428Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948